Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq148 136 7e-30 seq48 120 6e-25 seq1347 105 1e-20 seq282 105 1e-20 >seq148 Length=170690 Score = 136 bits (150), Expect = 7e-30 Identities = 185/252 (73%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAG 127 || ||||||||||| ||||| ||||| ||||| |||||| |||| ||| | || | Sbjct 139693 ACGTTTACTTTGAACAAATTTGAGTGCTCAAATCAGGCCGATGTTGCCTGAAAAGTTTTG 139634 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAA 186 ||||||||||| ||||||||| | ||| ||||||| |||||||| | ||| ||| |||| Sbjct 139633 CATGGAATAATGGAATAGGAC-TTCGGCTCTATTTCGTTGGTTT-TCGGATCCGAGGTAA 139576 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||| || || || | ||||| || |||| | ||||||||||||| |||| Sbjct 139575 TGATCAAAAGAGACGGGCGGGGACGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGAC 139516 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||| |||| |||||||| ||| |||| ||||||||||| || ||| | Sbjct 139515 CGTAGCCAGACAGACTAAAGCGAAAGCATTCGTCAAGCATGTTTTCATTGGCCA-TGAGC 139457 Query 307 GAAAGTTAGGGG 318 |||||| || || Sbjct 139456 GAAAGTCAGAGG 139445 >seq48 Length=770877 Score = 120 bits (132), Expect = 6e-25 Identities = 179/251 (71%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||| |||| |||| ||||| |||||| |||| ||| | | Sbjct 736914 ACGTTTACTTTGAACAAATCTGAGTACTCAAATCAGGCCGATGTTGCCTGAAAAGTAATG 736855 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||| | ||||||||| | |||||||||||||||||||| | || ||| ||| | Sbjct 736854 CATGGAATATTGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTTGGGTCCGAAGTAGT 736796 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||| | | || || ||||| ||| ||| | |||||||||||||| |||| Sbjct 736795 GATCGAATGAGACAGGCGGGGATGTTTGTAAGGCTGCGACAGAGGTGAAATTCATGGAAC 736736 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||| | || |||||||| ||| |||| |||| |||||| || ||| || Sbjct 736735 GTAGCCAGACAGAATAGAGCGAAAGCATTCGTCAAGCATGTCTTCATTGGCCA-TGAGCG 736677 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 736676 AAAGTTAGAGG 736666 >seq1347 Length=8583 Score = 105 bits (116), Expect = 1e-20 Identities = 176/251 (70%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||| ||| |||| |||| ||||| |||||| |||| ||| | | Sbjct 463 ACGTTTACTTCGAACAAATCTGAGTACTCAAATCAGGCCGATGTTGCCTGAAAAGTAATG 404 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||| | ||||||||| | |||||||||||||||| || | || ||| ||| | Sbjct 403 CATGGAATATTGGAATAGGAC-TCTGGTTCTATTTTGTTGGGTTTTGGGTCCGAAGTAGT 345 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||| | | || || ||||| ||| ||| | |||||||||||||| |||| Sbjct 344 GATCGAATGAGACAGGCGGGGATGTTTGTAAGGCTGCGACAGAGGTGAAATTCATGGAAC 285 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||| | || |||||||| ||| |||| |||| |||||| || ||| || Sbjct 284 GTAGCCAGACAGAATAGAGCGAAAGCATTCGTCAAGCATGTCTTCATTGGCCA-TGAGCG 226 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 225 AAAGTTAGAGG 215 >seq282 Length=94535 Score = 105 bits (116), Expect = 1e-20 Identities = 176/251 (70%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||| ||| |||| |||| ||||| |||||| |||| ||| | | Sbjct 8522 ACGTTTACTTCGAACAAATCTGAGTACTCAAATCAGGCCGATGTTGCCTGAAAAGTAATG 8463 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||| | ||||||||| | |||||||||||||||| || | || ||| ||| | Sbjct 8462 CATGGAATATTGGAATAGGAC-TCTGGTTCTATTTTGTTGGGTTTTGGGTCCGAAGTAGT 8404 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||| | | || || ||||| ||| |||| | |||||||||||||| |||| Sbjct 8403 GATCGAATGAGACAGGCGGGGATGTTTGTATGGCTGCGACAGAGGTGAAATTCATGGAAC 8344 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||| | || |||||||| ||| |||| |||| |||||| || | | || Sbjct 8343 GTAGCCAGACAGAATAGAGCGAAAGCATTCGTCAAGCATGTCTTCATTGGCCA-TTAGCG 8285 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 8284 AAAGTTAGAGG 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915166814848