Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq26 113 2e-22 seq5 102 3e-19 seq903 91.5 6e-16 seq238 80.6 1e-12 seq189 80.6 1e-12 >seq26 Length=1198274 Score = 113 bits (124), Expect = 2e-22 Identities = 103/129 (80%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | || || |||| ||||||||||||||||||| || || ||||| Sbjct 942252 GAGCATGAGCACACATGATGAGACCTGAAAGATGGTGAACTATGCTTGCGCGGGTTGAAG 942311 Query 609 CCAGAGGAAACT-CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||| ||||||||| || |||| ||||| |||||||||| || |||||| Sbjct 942312 CCAGAGGAAACTGGTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCCATTGTCAAAC 942371 Query 668 TTGGGTATA 676 || ||||| Sbjct 942372 GTGAGTATA 942380 >seq5 Length=2503511 Score = 102 bits (112), Expect = 3e-19 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | || |||| |||| ||||||||||||| |||||||||| || ||| ||||| Sbjct 2492797 GAGCATGAACATACTTGTTAAGACCCGAAAGATGATGAACTATGCTTGCGCAGGTTGAAG 2492856 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||| | ||| || || | | ||||| | ||||||||||| |||||| Sbjct 2492857 CCAGAGGAAACTTTAATGGCGGACCGTGGAGATTCTGACATGCAAATCGATTGTCAAACG 2492916 Query 669 TGGGTATAGGG 679 || | |||||| Sbjct 2492917 TGAGCATAGGG 2492927 >seq903 Length=21091 Score = 91.5 bits (100), Expect = 6e-16 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105 || |||||| || |||||| | || |||| ||| || || || || |||||||| ||| Sbjct 820 AGCTGTTTGAGATTGCAGCCCAAAGTGGGTGGTGAACCTCATCCAAGGCTAAATACGGGC 879 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 ||| ||||||||| |||||| |||| |||| ||||||||||| || | |||||| Sbjct 880 ACGAGTCCGATAGCGAACAAGTTTCGTGAGTTAAAGTTGAAAAGCACTCTGAAGAGAGAG 939 Query 166 TTAAAAAGCACGTGAAA 182 | || || || ||||| Sbjct 940 -TGAAGAGTACATGAAA 955 >seq238 Length=109580 Score = 80.6 bits (88), Expect = 1e-12 Identities = 99/134 (74%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAG 108 ||||| || |||||| | || |||| |||||| | || || |||||||| ||| | Sbjct 85712 TGTTTAAGATTGCAGCCCAAAGTGGGTGGTAAACTCTATCCAATGCTAAATACGGGCACG 85653 Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168 || | ||||||| |||||| |||| |||| ||||||||||| || | |||||| | Sbjct 85652 AGTCTGATAGCGAACAAGTTTCGTGAGTTAAAGTTGAAAAGCACTCTGAAGAGAGAG-TG 85594 Query 169 AAAAGCACGTGAAA 182 || || || ||||| Sbjct 85593 AAGAGTACATGAAA 85580 >seq189 Length=137573 Score = 80.6 bits (88), Expect = 1e-12 Identities = 99/134 (74%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAG 108 ||||| || |||||| | || |||| |||||| | || || |||||||| ||| | Sbjct 133479 TGTTTAAGATTGCAGCCCAAAGTGGGTGGTAAACTCTATCCAATGCTAAATACGGGCACG 133538 Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168 || | ||||||| |||||| |||| |||| ||||||||||| || | |||||| | Sbjct 133539 AGTCTGATAGCGAACAAGTTTCGTGAGTTAAAGTTGAAAAGCACTCTGAAGAGAGAG-TG 133597 Query 169 AAAAGCACGTGAAA 182 || || || ||||| Sbjct 133598 AAGAGTACATGAAA 133611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079922222300