Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5 421 2e-115 seq139 154 5e-35 >seq5 Length=2503511 Score = 421 bits (466), Expect = 2e-115 Identities = 313/361 (87%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAA 233 |||||||| ||| |||||||| |||| | | || ||||| | ||| | || || Sbjct 2494874 CCGCTTCACTGAATAAGTAAAGAAACATTGATGGGAGTGGCCTGTCATTGACGTCCTCGT 2494815 Query 234 CG-GCTC-CCACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 || ||| || |||||| ||||||| || ||| |||||||| || ||||||| ||| Sbjct 2494814 CGAGCTTTCCGCTTATTGCTACACCCGCCATGTCTCCTCACAAAGCCGAACTAGAGCCAA 2494755 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| ||| Sbjct 2494754 GCTCAATAGGGTCTTCTTTCCTCGCTGATTCTACCAAGCCCGTTCCCTTGGCTGTGATTT 2494695 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2494694 TGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGTGCATCACTAAT 2494635 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 2494634 TAGATGATGAGGCATTTGCCTACCTTAAGAGAGTCATAGTTACTCCAACCGTTTACCCGT 2494575 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2494574 ACTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 2494515 Query 531 A 531 | Sbjct 2494514 A 2494514 >seq139 Length=184496 Score = 154 bits (170), Expect = 5e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| Sbjct 151237 ACGAGGCATTTGGCTATCTTAAGAGAGTCATAGTTACTCCCGCTGTTTAACCAGGCTTGA 151178 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 || ||||||||||||||||| ||| ||||||| |||||||||||||||| |||| Sbjct 151177 TTAAATTTCTTCACTTTGACTTTCGGAGCACTAAGCAGAAATCACATTGCATCAA 151123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635140707648