Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq10236 84.2 4e-14 >seq10236 Length=237 Score = 84.2 bits (92), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 9/174 (5%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||| | ||||||||| || | | Sbjct 166 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAACAGTCGGAGCCTCGTAAGG-G 108 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA-GTCGTCACCAGCGAGGTTAAG 129 |||||||||| ||||||| |||||| | | ||| ||| || ||| ||| || |||| Sbjct 107 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACGT--TCAGTAGCAAGCTTAAC 50 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 | | ||| || || || ||||||||| | || |||||| ||||| Sbjct 49 CGTATAGGGC-----AGGCGTAGCGAAAGCGAGTCCGAATAGGGCGTTCAGTTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972672261632