Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5669 104 4e-20 seq11534 80.6 4e-13 seq4357 80.6 4e-13 >seq5669 Length=8990 Score = 104 bits (114), Expect = 4e-20 Identities = 160/219 (73%), Gaps = 11/219 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| ||||| ||| ||| ||||| |||||| || ||||||||||| ||| Sbjct 4893 GTACAAAGGGCAGGTACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAA-TTC 4950 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| | | |||| || ||| ||||||| |||| | | |||| || || Sbjct 4951 CTCGTTCACGGGAAACATTTCCAAGCCCCTATCCCTGTCACAACGGTAATTGACCAGTTT 5010 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATAC-ATCAGTGTAGCGCGCGTGC 178 ||| || | || | |||| || ||| | || || ||| ||| |||||||| Sbjct 5011 GCCCAACCCATTTGGGCCAGGT--CTGAGTCGCT-AACACTGTCATTGT--CGCGCGTGT 5065 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||| |||||||||||| |||||||||||||||| Sbjct 5066 GGCCCCAGACATCTAAGGGC--GACAGACCTGTTATTGC 5102 >seq11534 Length=1991 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||| ||| Sbjct 69 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAA-TTC 12 Query 61 CTCGTT 66 |||||| Sbjct 11 CTCGTT 6 >seq4357 Length=376 Score = 80.6 bits (88), Expect = 4e-13 Identities = 65/75 (87%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 146 GACTCGT-TGAATACATCAGTGT-AGCGCG-CGTGCGGCCCAGAACATCTAAGGGCATCA 202 ||||||| ||| | ||| ||| |||||| |||||||||| | |||||||||||||||| Sbjct 80 GACTCGTCTGACACCGTCATTGTTAGCGCGTCGTGCGGCCCCGGACATCTAAGGGCATCA 139 Query 203 CAGACCTGTTATTGC 217 ||||||||||||||| Sbjct 140 CAGACCTGTTATTGC 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751904340665