Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10967 152 9e-35 seq5669 91.5 3e-16 >seq10967 Length=1132 Score = 152 bits (168), Expect = 9e-35 Identities = 209/285 (73%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||| | ||||| | ||| | || || ||||||||||| ||||| ||||| Sbjct 769 ATGCCCTTGAAAAGGTGTCCGCGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 710 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| |||| ||| | || |||||||||||| ||||||||| | ||| Sbjct 709 TCAAATCAGGCCGATGTTGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 651 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || ||||| || Sbjct 650 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 592 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | ||||||||||||| |||| |||| ||||| |||||||| Sbjct 591 TGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAAGC 532 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 531 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 488 >seq5669 Length=8990 Score = 91.5 bits (100), Expect = 3e-16 Identities = 175/252 (69%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATACATTAG 127 || ||||||||||| ||||| || || ||||| ||||| |||| || | | | Sbjct 6082 ACGTTTACTTTGAACAAATTTGAATGCTCAAATCAGGCTGATGTTGCCTAAAGAGTTATG 6023 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAA 186 | ||||||| ||||| ||| | |||||||||| ||| ||| | ||||| | ||| Sbjct 6022 CGCGGAATAAAAGAATGCGAC-TTTGGTTCTATTTCGTTAATTT-TTGGACCAGAAGTAG 5965 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 || || || || || ||||| || |||| | ||||||||||||| |||| Sbjct 5964 TGGCCAAAAGAGACAGGCGGGGACGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGAC 5905 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||| ||||| |||||||| ||| |||| |||||| |||| | || ||| | Sbjct 5904 CGTAGCCAGACAAACTAAAGCGAAAGCATTCGTCAAGCATGTTTCCATTGACCA-TGAGC 5846 Query 307 GAAAGTTAGGGG 318 ||||||||| || Sbjct 5845 GAAAGTTAGAGG 5834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915079825088