Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq5669 138 2e-30 seq4357 107 4e-21 seq11534 78.8 2e-12 >seq5669 Length=8990 Score = 138 bits (152), Expect = 2e-30 Identities = 189/257 (74%), Gaps = 8/257 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | ||| |||||| ||| | ||| ||||||||||||||| Sbjct 5142 CTTCTTAGAGGGACAAGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTC- 5086 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||||||| ||||| |||||||| ||| |||||| | | ||| | || || Sbjct 5085 -GCCCTTAGATGTCTGGGGCCACACGCGCG--ACAATGACAGTGTTAGCGACT-CAG-AC 5031 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 || | || | || |||| || || || || | || ||| ||||||| | ||| Sbjct 5030 CTGGCCCAAATGGGTTGGGCAAACTGGTCAATTACCGTTGTGACAGGGATAGGGGCTTGG 4971 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | |||||||||| ||||||||| || ||||| ||| ||| |||||| Sbjct 4970 AAATGTTTCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTGATTA 4911 Query 312 CGTCCCTGCCCTTTGTA 328 ||| ||||||||||||| Sbjct 4910 CGTACCTGCCCTTTGTA 4894 >seq4357 Length=376 Score = 107 bits (118), Expect = 4e-21 Identities = 147/194 (76%), Gaps = 11/194 (6%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | ||| |||||| ||| | ||| ||||||||||||||||| Sbjct 194 CTTCTTAGAGGGACAAGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 137 Query 132 TGCCCTTAGATGTTCTGGGCCGCACG-CGCGCT-ACACTGACAGAGCCA-ACGAGTTCAT 188 ||||||||||||| | |||||||||| |||||| ||| |||| | | || ||||| ||| Sbjct 136 TGCCCTTAGATGTCCGGGGCCGCACGACGCGCTAACAATGACGGTGTCAGACGAG-TCA- 79 Query 189 CACCT--TGGCC--GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 |||| ||||| | |||| |||| || || || || | | |||||| ||||| | Sbjct 78 GACCTTCTGGCCCGGAAAGGGTTGGGCAAACTGGTCAATCACCGTCGTGACAGGGATCGG 19 Query 245 GCATTGCAATTATT 258 | ||| |||| || Sbjct 18 GGCTTGGAATTGTT 5 >seq11534 Length=1991 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 |||||||||| ||||||||| || ||||| ||| ||| |||||||||||||||||||| Sbjct 6 AACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTGATTACGTCCCTGCCCTTT 65 Query 326 GTA 328 ||| Sbjct 66 GTA 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947075623168