Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11759 205 7e-48 seq1473 132 4e-26 >seq11759 Length=791511 Score = 205 bits (226), Expect = 7e-48 Identities = 518/777 (67%), Gaps = 17/777 (2%) Strand=Plus/Minus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 ||||| || | ||||| || | |||||| | || | ||||||||| | ||||| Sbjct 466668 AATCCCCGAAGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAG 466609 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 || |||| || || ||||||||||| ||||| || ||| | | || || | | |||| Sbjct 466608 AAAGCGGTTGCCTCTTTCTGGACGGTTGAGGAAGTTGATCTAGCGAAGGATCTCACTGAC 466549 Query 61165 TGGG--AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 |||| ||| || || || || |||| || |||||| |||| ||||| ||||| | Sbjct 466548 TGGGAAAGCCTTAAT-GA-TGGCGAACGTCACTTCATTTCGTATGTCTTGGCTTTCTTCG 466491 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTGCA 61280 | || || || ||||| ||||| ||| || || ||| ||| | ||||| || Sbjct 466490 CAGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAA--TTTTTGTAACGAGGTTCA 466433 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340 | | | ||||| |||||||| || || | || | ||| | || || | || || || Sbjct 466432 AATTCCCGAGGCTCGTTGTTTTTATGGAATGCAAGTCGCCGTCGAAAACATTCATTCTGA 466373 Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTT 61400 |||||| | |||| |||||||| ||| ||| ||| | |||||| || |||| Sbjct 466372 AATGTACTCTCTTCTGATCGATACCTACGTCAAGGATCCAATGGAACGCGACTTTCTGTT 466313 Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGC--GGAAAGCGGATTGGGCCTTCAATTGG 61458 || ||||| | ||| | ||| ||| || ||| || |||||||| | | ||| Sbjct 466312 TAACGCCATTCAAACGTTGCCG--TGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGG 466255 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 || | | || || ||| | | | || || || |||| || || | || || || Sbjct 466254 ATTGCAAATAAAAAGGCACCCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAAGGC 466195 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 ||||| || ||| || ||||| | || || ||| | ||||| ||||| || ||||| Sbjct 466194 GTATTCTTTTCTGGTTCATTTGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCT 466135 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC- 61637 || || ||||| || |||||| |||| || ||||| ||| | || |||||||| Sbjct 466134 GGCCTCACCTTTAGTAATGAGCTGATCAGTCGAGACGAAGGCCTCCACACGGATTTTGCA 466075 Query 61638 TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 || || | || |||| || | | || || ||| ||| | || ||| || Sbjct 466074 TGCCTT-ATTTTTAAAC---ATATTATCAACAAGCCTACGGCGGAAAGGGTTTATGACAT 466019 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 | | |||||||| | ||| ||| |||||||| || ||||| |||| || || Sbjct 466018 CATGAGGGAGGCGGTCAGTATTGAATGCGAATTTCTTACAGACGCCCTGCCTGTTGATCT 465959 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 || |||||||||||| | |||||| |||||||| || |||||||| || || Sbjct 465958 TATTGGCATGAATTGTCGCTTAATGTGTCAGTATATAAGGTTCGTTGCCGATCGACT 465902 >seq1473 Length=538379 Score = 132 bits (146), Expect = 4e-26 Identities = 212/299 (71%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| |||||||| || | ||| || ||| ||||||||| || || || ||||||| Sbjct 274497 CATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCCTCAGC 274438 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || || || || | |||| | | || | |||||||||||| || | Sbjct 274437 GCCAGTG-TTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGAT 274379 Query 66459 AGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGT 66518 ||||||| || | || |||||| ||| || || ||||| || |||||| ||| Sbjct 274378 AGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCGGTGCTGT 274319 Query 66519 TGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGG 66578 ||||||| || | ||||||||| || ||||| || | |||||||| || |||| | Sbjct 274318 TGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCGATAAACG 274259 Query 66579 ATCCTCGTGC-CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 | || ||| || || ||||||||| ||||| || ||||| || | |||||||| Sbjct 274258 -TATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTTTTTCGAGAT 274201 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||||| |||||||| | || || || | ||||||||||| |||| ||| | | Sbjct 274916 CCACAAATTTGGGAAGAGAAATGGAAGCCAAATTGCAGACAGCAGTCTCTGTAGGCGAGC 274857 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||||||||| || ||||| || || ||| |||||| || | | || || | Sbjct 274856 TGTACTCGACAATCTCAGTGCAAAGGTTCGAGCACTTTATGGTCCCTAGGTGTTGATGGT 274797 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 || |||||||||||| | ||| || |||| ||| ||||| |||| || || | ||| Sbjct 274796 TAGACTTGCGATTGCAGGAATCTTTATACAGCATAAACGGATTGCCTGTTTCGATTTGAT 274737 Query 66171 ACTCAATGAT 66180 |||||| || Sbjct 274736 TCTCAATAAT 274727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397504375577840