Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 205 7e-48
seq1473 132 4e-26
>seq11759
Length=791511
Score = 205 bits (226), Expect = 7e-48
Identities = 518/777 (67%), Gaps = 17/777 (2%)
Strand=Plus/Minus
Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104
||||| || | ||||| || | |||||| | || | ||||||||| | |||||
Sbjct 466668 AATCCCCGAAGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAG 466609
Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164
|| |||| || || ||||||||||| ||||| || ||| | | || || | | ||||
Sbjct 466608 AAAGCGGTTGCCTCTTTCTGGACGGTTGAGGAAGTTGATCTAGCGAAGGATCTCACTGAC 466549
Query 61165 TGGG--AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222
|||| ||| || || || || |||| || |||||| |||| ||||| ||||| |
Sbjct 466548 TGGGAAAGCCTTAAT-GA-TGGCGAACGTCACTTCATTTCGTATGTCTTGGCTTTCTTCG 466491
Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTGCA 61280
| || || || ||||| ||||| ||| || || ||| ||| | ||||| ||
Sbjct 466490 CAGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAA--TTTTTGTAACGAGGTTCA 466433
Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340
| | | ||||| |||||||| || || | || | ||| | || || | || || ||
Sbjct 466432 AATTCCCGAGGCTCGTTGTTTTTATGGAATGCAAGTCGCCGTCGAAAACATTCATTCTGA 466373
Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTT 61400
|||||| | |||| |||||||| ||| ||| ||| | |||||| || ||||
Sbjct 466372 AATGTACTCTCTTCTGATCGATACCTACGTCAAGGATCCAATGGAACGCGACTTTCTGTT 466313
Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGC--GGAAAGCGGATTGGGCCTTCAATTGG 61458
|| ||||| | ||| | ||| ||| || ||| || |||||||| | | |||
Sbjct 466312 TAACGCCATTCAAACGTTGCCG--TGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGG 466255
Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518
|| | | || || ||| | | | || || || |||| || || | || || ||
Sbjct 466254 ATTGCAAATAAAAAGGCACCCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAAGGC 466195
Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578
||||| || ||| || ||||| | || || ||| | ||||| ||||| || |||||
Sbjct 466194 GTATTCTTTTCTGGTTCATTTGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCT 466135
Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC- 61637
|| || ||||| || |||||| |||| || ||||| ||| | || ||||||||
Sbjct 466134 GGCCTCACCTTTAGTAATGAGCTGATCAGTCGAGACGAAGGCCTCCACACGGATTTTGCA 466075
Query 61638 TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697
|| || | || |||| || | | || || ||| ||| | || ||| ||
Sbjct 466074 TGCCTT-ATTTTTAAAC---ATATTATCAACAAGCCTACGGCGGAAAGGGTTTATGACAT 466019
Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757
| | |||||||| | ||| ||| |||||||| || ||||| |||| || ||
Sbjct 466018 CATGAGGGAGGCGGTCAGTATTGAATGCGAATTTCTTACAGACGCCCTGCCTGTTGATCT 465959
Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814
|| |||||||||||| | |||||| |||||||| || |||||||| || ||
Sbjct 465958 TATTGGCATGAATTGTCGCTTAATGTGTCAGTATATAAGGTTCGTTGCCGATCGACT 465902
>seq1473
Length=538379
Score = 132 bits (146), Expect = 4e-26
Identities = 212/299 (71%), Gaps = 4/299 (1%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| |||||||| || | ||| || ||| ||||||||| || || || |||||||
Sbjct 274497 CATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCCTCAGC 274438
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
||| ||| || || || || || | |||| | | || | |||||||||||| || |
Sbjct 274437 GCCAGTG-TTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGAT 274379
Query 66459 AGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGT 66518
||||||| || | || |||||| ||| || || ||||| || |||||| |||
Sbjct 274378 AGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCGGTGCTGT 274319
Query 66519 TGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGG 66578
||||||| || | ||||||||| || ||||| || | |||||||| || |||| |
Sbjct 274318 TGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCGATAAACG 274259
Query 66579 ATCCTCGTGC-CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636
| || ||| || || ||||||||| ||||| || ||||| || | ||||||||
Sbjct 274258 -TATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTTTTTCGAGAT 274201
Score = 100 bits (110), Expect = 2e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050
||||||| |||||||| | || || || | ||||||||||| |||| ||| | |
Sbjct 274916 CCACAAATTTGGGAAGAGAAATGGAAGCCAAATTGCAGACAGCAGTCTCTGTAGGCGAGC 274857
Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110
| ||||||||||| || ||||| || || ||| |||||| || | | || || |
Sbjct 274856 TGTACTCGACAATCTCAGTGCAAAGGTTCGAGCACTTTATGGTCCCTAGGTGTTGATGGT 274797
Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170
|| |||||||||||| | ||| || |||| ||| ||||| |||| || || | |||
Sbjct 274796 TAGACTTGCGATTGCAGGAATCTTTATACAGCATAAACGGATTGCCTGTTTCGATTTGAT 274737
Query 66171 ACTCAATGAT 66180
|||||| ||
Sbjct 274736 TCTCAATAAT 274727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397504375577840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |