Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq124733 196 7e-48 seq39205 145 1e-32 seq13233 138 2e-30 seq1804 132 7e-29 seq12997 129 9e-28 seq62404 120 5e-25 seq11368 96.9 5e-18 seq87402 78.8 1e-12 seq1757 78.8 1e-12 seq12202 75.2 2e-11 >seq124733 Length=1102 Score = 196 bits (216), Expect = 7e-48 Identities = 205/259 (79%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 1082 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 1025 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||| ||| | ||||| | ||||| | | ||||| | || Sbjct 1024 CTCGTTCATGGGGAACAATTACAAGCCCCAATCCCTAGCACGAAGGAGATTCAACGGGTT 965 Query 120 ACCCGGACCTGTCGG-CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | ||| |||| ||| || | | | || ||| | | |||||||||||||||||| Sbjct 964 TCCCAGCCCTTTCGGGCCAGGGAGGCATCCACGCTGATTCCTTCAGTGTAGCGCGCGTGC 905 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAA 237 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| | |||| Sbjct 904 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA--TTTCGTGTGGCTAA 848 Query 238 AAGGCCATC-TCCCTCGAA 255 | | | || |||||| || Sbjct 847 ACGCCACTCGTCCCTCTAA 829 >seq39205 Length=5034 Score = 145 bits (160), Expect = 1e-32 Identities = 166/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| |||||||||| ||| ||||| |||||| || |||| |||||||| | Sbjct 1591 GTACAAAGGGCAGAGACGTAGTCAGCGCAAGCTT-ATGACTTGCACTTAGTAGGAATT-C 1648 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT-GAAATTTCAAAGATT 119 |||||| | | || |||||||| | |||||| |||||| | || | || || Sbjct 1649 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCCGTCACGACAGTGATGAAACAGTTT 1708 Query 120 ACCCGGACCTGTCGGCCAAGGTGA-TAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 || ||| |||| | |||| |||||||| ||| | ||| |||||||| ||| Sbjct 1709 GCCTAACCCTTTCGGGCCAGGTTCCTAGACTCGCTGACACCGTCATTGTAGCGCATGTGT 1768 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 ||||| | | |||||||||||||||||||||||||||| Sbjct 1769 GGCCCCGGATATCTAAGGGCATCACAGACCTGTTATTG 1806 >seq13233 Length=11326 Score = 138 bits (152), Expect = 2e-30 Identities = 169/224 (75%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 97 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 154 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 155 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 214 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| | ||||| || | ||| |||||||| |||| Sbjct 215 GCCCAACCCTTTCGGGCCAGGTTCCCAAACTCGCTGGCACCGTCATTGTAGCGCACGTGT 274 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | ||||||||||| |||||||||||||||||| ||||| Sbjct 275 GGCCCCGGACATCTAAGGGTATCACAGACCTGTTATTG-CTCAA 317 >seq1804 Length=26765 Score = 132 bits (146), Expect = 7e-29 Identities = 170/225 (76%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 14724 GTACAAAGGGCATGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 14667 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 14666 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 14607 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 14606 GCCCAACCCTTTCGGGCCAGGTTCCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 14547 Query 179 GGCC-CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||| |||| ||||||||||||||||||||||||||||| ||||| Sbjct 14546 GGCTTCAGA-CATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 14504 >seq12997 Length=11466 Score = 129 bits (142), Expect = 9e-28 Identities = 164/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| | ||||| ||||||| | Sbjct 2933 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTTCACTTACCAGGAATT-C 2876 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 ||| || | | || ||||| || || ||||| ||| ||| ||| | | || Sbjct 2875 CTCTTTCACGCGGAATAATTGTAAGCCTCGATCCCAGTCATGACGGTGA--TGAAACAGT 2818 Query 118 TTACCCGGACCTGTCGGCCAAGG-TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || || ||| |||| | ||| | |||||||| || | ||| |||||||| ||| Sbjct 2817 TTGCCTAACCCTTTCGGGCCAGGATCCTAGACTCGCTGGCACCGTCATTGTAGCGCACGT 2758 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 | ||| | | |||||||||||||||||||||||||||||| Sbjct 2757 GTGGCTCCGGACATCTAAGGGCATCACAGACCTGTTATTG 2718 >seq62404 Length=3035 Score = 120 bits (132), Expect = 5e-25 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| || | |||||| || ||||| ||||||| | Sbjct 524 GTACAAAGGGCAGGGACGTAATCAGCGCAGGCCT-ATGACTTGCACTTACCAGGAATT-C 467 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 466 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 407 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | || || ||||| |||| Sbjct 406 GCCCAACCCTTTCGGGCCAGGTTCCCAGACTCGCTGGCACCGACATTGAAGCGCACGTGT 347 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 ||||| | ||||||||||||| ||||||||||||||| Sbjct 346 GGCCCCGGACATCTAAGGGCACCACAGACCTGTTATT 310 >seq11368 Length=12381 Score = 96.9 bits (106), Expect = 5e-18 Identities = 160/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||| ||||| ||| ||| ||||| |||||| || ||||| ||||| |||| Sbjct 4815 TACAAAGGGCAGAAACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAA-TTCC 4758 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTA 120 | ||| | | || | | |||| | ||||| |||||| | || | || | Sbjct 4757 TGGTTCACGGGGAATAGTCGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTGG 4698 Query 121 CCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 || ||| ||| |||| | | ||||| | || | | ||| |||||||| |||| | Sbjct 4697 GCCAACCCTTTCGAGCCAGGTTCCCAGACTAGCTGGAACCGTCATTGTAGCGCACGTGTG 4638 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||| ||||| ||||||||| ||| ||||| Sbjct 4637 GCCC-GGACATCTAAGGACATCAAAGACCTGTTGTTG-CTCAA 4597 >seq87402 Length=1933 Score = 78.8 bits (86), Expect = 1e-12 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||| | ||||| ||| Sbjct 561 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTTCCAGGAA-TTC 618 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105 |||||| | | || |||||||| | |||| | ||| |||| Sbjct 619 CTCGTTCACGGGAAATAATTGCAAACCCCGATCCTCGTCATGATG 663 >seq1757 Length=27001 Score = 78.8 bits (86), Expect = 1e-12 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 ||||||| || | ||| |||||||| | || ||||| | |||||||||||||||||| Sbjct 23176 AGACTCGCTGGCACCGTCATTGTAGCGCACATGTGGCCCCGGACATCTAAGGGCATCACA 23235 Query 205 GACCTGTTATTGC 217 ||||||||||||| Sbjct 23236 GACCTGTTATTGC 23248 >seq12202 Length=11907 Score = 75.2 bits (82), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 12/208 (6%) Strand=Plus/Plus Query 15 GACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCA 74 || ||| ||| ||| ||||| || ||| || || || || |||| ||||||| | || | Sbjct 2565 GATGTAATCAGCGCAAGCTT-ATCACTTGCACTGACCAGAAATT-CCTCGTTCACGAGAA 2622 Query 75 ACAATTGCAATGATCTATCCCCATCACGA---TGAAATTTCAAAGATTA--CCCGGACCT 129 | || | | | ||||| ||||||| ||| | ||| ||| ||| | ||| Sbjct 2623 ATAAATTGAGGCCCCGATCCCAATCACGACGGTGATA----AAATATTTTGCCCAGCCCT 2678 Query 130 GTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAAC 188 |||| | |||| | ||||||| || | || ||||| || | || ||||| | || Sbjct 2679 TTCGGGCCAGGTTCTTAGACTCGCTGGCACCGTCTTTGTAGTGCACATGTGGCCCCGGAC 2738 Query 189 ATCTAAGGGCATCACAGACCTGTTATTG 216 ||| ||||||||||||||| |||||||| Sbjct 2739 ATCCAAGGGCATCACAGACTTGTTATTG 2766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750627731835