Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq124733 206 5e-51 seq1031 159 6e-37 seq1601 158 2e-36 seq30154 156 8e-36 seq12985 141 2e-31 seq12997 98.7 2e-18 seq55439 96.9 6e-18 seq39205 93.3 8e-17 seq30838 93.3 8e-17 seq13505 87.8 3e-15 seq7332 82.4 1e-13 seq37230 75.2 2e-11 >seq124733 Length=1102 Score = 206 bits (228), Expect = 5e-51 Identities = 220/285 (77%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| ||| | || ||||| ||| | | |||||||||||||||||||||||||| Sbjct 120 TGCTCTTCGCTGAGCGTCCCGGGTGGCCGGCGCGTTTACTTTGAAAAAATTAGAGTGTTC 179 Query 100 AAAGCAGGCCTTT----GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| || || ||||| |||||||||||| ||||||||| | |||| Sbjct 180 AAAGCAGGCATTCACAAGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGT 238 Query 156 TCTATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||||||||||| | ||| | | ||||||||||| ||||| | |||||| | Sbjct 239 TCTATTTTGTTGGTTT-TCGGAACTGGAGGTAATGATTAACAGGGACAAACGGGGGCATT 297 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| || ||||||||||||||||||| ||||| ||||||||||||||| Sbjct 298 CGTATTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGC 357 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||| |||||||||||| ||| |||||||||| || || Sbjct 358 ATTTGTCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 401 >seq1031 Length=31827 Score = 159 bits (176), Expect = 6e-37 Identities = 215/289 (74%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || || |||||| |||||| ||| | ||||||||||| |||| Sbjct 21624 TCCGGATGCCTTTAACCGGGTGTC---GGGAGCGGACAGCATCTTTACTTTGAACAAATG 21568 Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA--GCATGGAATAATAGAATAGGAC 148 | ||| |||| | ||||||||| | | | ||| |||||||||||| |||||||| Sbjct 21567 TGGGTGCTCAAGGAAGGCCTTTGTGCCTAGAAATTCTTGCATGGAATAATGAAATAGGAC 21508 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||| |||| | ||| ||| ||||||||||| ||||| || |||| Sbjct 21507 TTT-GGTTCTATTTTGTTTGTTT-TCGGATCCGAAGTAATGATTAAGAGGGACAGACGGG 21450 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG-AAGACTAACTACTG 266 || | |||| ||| |||||||||||||| ||| |||| | |||| |||||| | Sbjct 21449 GGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTCGGA-TTATCGCCAGACAAACTACAG 21391 Query 267 CGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 ||||| || ||||| ||| ||||||| |||| || | ||||| || Sbjct 21390 CGAAAAAATTTGCCAAGAATGCTTTCATTGTTCAG-GAGCAAAAGTCAG 21343 >seq1601 Length=27832 Score = 158 bits (174), Expect = 2e-36 Identities = 187/246 (76%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCAT 130 ||||||||||| |||| || || | || |||||||||| || ||| | || |||| Sbjct 11007 TTTACTTTGAACCAATTTGAATGCTTAAGACAGGCCTTTGTGCCTAGAA-ATTTTTGCAT 11065 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 | |||||| |||||||| | ||||||||||||||||||||| | ||| || | | | Sbjct 11066 GAAATAATGAAATAGGACTT-CGGTTCTATTTTGTTGGTTTCCGGATCCGAAGTTAAGGT 11124 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| || |||||| | |||| ||| |||||||||||||| ||| | || Sbjct 11125 TAAGAGGGAGAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGA-TCAT 11183 Query 251 TG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | || | |||||| |||||||| ||| |||||||||||||||| ||||| || |||| Sbjct 11184 CGCCAGGCAAACTACAGCGAAAGCATTCGTCAAGGATGTTTTCATTGATCAG-GAGCGAA 11242 Query 310 AGTTAG 315 ||| || Sbjct 11243 AGTCAG 11248 >seq30154 Length=6371 Score = 156 bits (172), Expect = 8e-36 Identities = 216/289 (75%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTT--TTACTTTGAAAAAATTA 91 |||| || || || ||||||||| | || | | | ||| | |||||||||| ||||| Sbjct 376 TCCGGATACCTTTAACTGGGTGT-CAGGAGTGT-ATGACATCTTTACTTTGAACAAATTT 319 Query 92 GAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 |||| |||| |||||||||| || ||| ||| ||||||||||| |||||||| Sbjct 318 AAGTGCTCAAGACAGGCCTTTGTGCCTAGAAATTCTTA-CATGGAATAATGAAATAGGAC 260 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||||||||| | ||| ||| ||||| |||| ||||| || |||| Sbjct 259 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAACTAATGGTTAAGAGGGACAGACGGG 202 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA-AGACTAACTACTG 266 || | |||| ||| |||||||||||||| |||| || | |||| |||||| | Sbjct 201 GGCATTTGTATAGCGGTGTTAGAGGTGAAATTCTGGGATC-ATCGTCAGACAAACTACAG 143 Query 267 CGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 ||||| | | |||| ||||||||||| || || || ||||||| || Sbjct 142 CGAAATCAATTGTCAAGAATGTTTTCATTGATTAG-GAGCGAAAGTCAG 95 >seq12985 Length=11470 Score = 141 bits (156), Expect = 2e-31 Identities = 182/245 (74%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA--GCATG 131 ||||||||| | ||||| ||||| |||| ||||||||||| | | | ||| ||||| Sbjct 9285 TTTACTTTGCACAAATTTGAGTGCTCAAGGCAGGCCTTTGTGCCTAGAAATTCTTGCATG 9344 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGAT 190 ||||||| || | ||| | | ||||||| | |||||||| | ||| ||| |||||| | Sbjct 9345 GAATAATGAAAGAAGACTT-CAGTTCTATATGGTTGGTTT-TCGGATCCGAAGTAATGGT 9402 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 || ||||| || |||||| | |||| |||| ||||||||||| || |||| | Sbjct 9403 TAGGAGGGACAGACGGGGGCATTTGTATGGCTTTGTTAGAGGTGAAATACTGGGATCAAC 9462 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| |||||| |||||| || ||||| ||||||||||| ||||| | ||||| Sbjct 9463 GCCAGACAAACTACAACGAAAGTATTTGCCAAGAATGTTTTCATTGATCAG-GGGCGAAA 9521 Query 311 GTTAG 315 || || Sbjct 9522 GTCAG 9526 >seq12997 Length=11466 Score = 98.7 bits (108), Expect = 2e-18 Identities = 111/144 (77%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || || |||||| |||||| | | | ||||||||||| ||||| Sbjct 2518 TCCGGATGCCTTTAACCGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 2574 Query 91 A-GAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA--GCATGGAATAATAGAATAGGA 147 ||||| |||| ||||||||||| | | | ||| |||||||||||| ||||||| Sbjct 2575 TTGAGTGCTCAAGGCAGGCCTTTGTGCCTAGAAATTCTTGCATGGAATAATGAAATAGGA 2634 Query 148 CGTGCGGTTCTATTTTGTTGGTTT 171 | | |||||||||||||||||||| Sbjct 2635 CTT-CGGTTCTATTTTGTTGGTTT 2657 >seq55439 Length=3497 Score = 96.9 bits (106), Expect = 6e-18 Identities = 139/192 (72%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTA 185 |||||||||||| |||| || | || ||||||||||||||||| | ||| | | ||| Sbjct 1753 GCATGGAATAATGGAATTGGGACTTCGATTCTATTTTGTTGGTTT-TCGGATCTGAAGTA 1811 Query 186 ATGATTAATAGG----GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCT 241 ||| |||| ||| ||| | ||||| || ||| ||| |||| |||||||| Sbjct 1812 ATGGTTAACAGGGACAGATGGGGGGGGGCGTTTGTACGGCTGTGTTAGAGTTGAAATTCC 1871 Query 242 TGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||| |||| |||||| |||||||| || ||||| ||||||||||| ||||| Sbjct 1872 GGGACCCTCGCCAGACAAACTACGGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCAG 1931 Query 302 TGAACGAAAGTT 313 || | |||||| Sbjct 1932 -GAGCAAAAGTT 1942 >seq39205 Length=5034 Score = 93.3 bits (102), Expect = 8e-17 Identities = 127/176 (72%), Gaps = 21/176 (12%) Strand=Plus/Minus Query 141 AATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGA 199 |||||||| | |||||||||||| |||||| || ||| ||| ||||||||||| ||||| Sbjct 2419 AATAGGACTT-CGGTTCTATTTTTTTGGTT-CTCGGATCCGAAGTAATGATTAAGAGGGA 2362 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 || || | | |||||||||||| | |||| | |||| | Sbjct 2361 CAGATGGAGTT-----------------AGAGGTGAAATTTTGGGATCTTCGCCAGACAA 2319 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 ||||| |||||||| || ||||| ||||||||||| ||||| || ||||||| || Sbjct 2318 ACTACAGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 2264 Score = 78.8 bits (86), Expect = 2e-12 Identities = 122/172 (71%), Gaps = 22/172 (13%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGG--GGAGCCAGGACTTTTACTTTGAAAAAATTA 91 |||| ||||| || ||||||||| ||| | | | | | || | |||||| ||||| Sbjct 2604 TCCGGATGCCTTTAACTGGGTGT--CGGAAGCGGACGGCATCTTCATTTTGAACAAATTT 2547 Query 92 GAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTG 151 ||||| | || |||| |||| ||||| |||||| |||||||| | Sbjct 2546 GAGTGCTTAAGGCAGCCCTT---------------GCATGAAATAATGAAATAGGACTT- 2503 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAG 202 |||||||||||| |||||| || ||| ||| ||||||||||| ||||| || Sbjct 2502 CGGTTCTATTTTTTTGGTT-CTCGGATCCGAAGTAATGATTAAGAGGGACAG 2452 >seq30838 Length=6249 Score = 93.3 bits (102), Expect = 8e-17 Identities = 140/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTA 185 |||||||||||| |||||||| | ||||||||||| ||||| | || ||| ||| ||| Sbjct 1196 GCATGGAATAATGAAATAGGACTT-CGGTTCTATTTAGTTGG-TCCTCGGATCCGAAGTA 1253 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||| ||| ||||| || |||||| | |||| ||| ||| ||| || |||||| Sbjct 1254 ATGGCTAAGAGGGAAAGACGGGGGCTTTTGTATGGTGGTGTTAGACGTG-AAGTCTTGGG 1312 Query 246 TTTATTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 | || | |||| || ||| | |||| | || ||| ||||||||||| ||||| | Sbjct 1313 ATCATCGCTAGACAAAATACAGAGAAAACATTTGCCAGAAATGTTTTCATTGATCAG-AA 1371 Query 305 ACGAAAGTTAG 315 ||||||| || Sbjct 1372 GCGAAAGTCAG 1382 >seq13505 Length=11191 Score = 87.8 bits (96), Expect = 3e-15 Identities = 176/251 (70%), Gaps = 15/251 (6%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG--CATG 131 |||| |||||| || || |||| || | |||||| | || | |||| ||| |||| Sbjct 3235 TTTATTTTGAATAATTTTGAGTTTTTAGGGCAGGCTGTCGCGCCAATAAATTCTTTCATG 3294 Query 132 GAATAATAGAATAGGACGTGCGGT-TCTATTTTGTTGGT-TTCTAGGACCGCCGTAATGA 189 |||||| ||||| || | |||| | | ||||||||| |||| | || |||||| Sbjct 3295 GAATAAAGAAATAGAACTT-CGGTCTGTTTTTTGTTGGGATTCTTGATCCAAAGTAATGG 3353 Query 190 TTAATAGGGATAGTCGGGGGTGTCA---GTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | || ||| ||| | |||| | || |||| ||| || ||||||||||| |||| Sbjct 3354 TGAAGAGGAATA--CAGGGGAGGCACTTGTATGATGGTGTTAGGGGTGAAATTCTGGGAT 3411 Query 247 --TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 | || ||| |||||| ||||||||| | |||| || |||||||| ||||| | Sbjct 3412 CATCGCTGGAGA--AACTACAGCGAAAGCGCTTGTCAAGAATATTTTCATTGATCAG-AA 3468 Query 305 ACGAAAGTTAG 315 ||||||| || Sbjct 3469 GCGAAAGTCAG 3479 >seq7332 Length=15556 Score = 82.4 bits (90), Expect = 1e-13 Identities = 165/243 (68%), Gaps = 34/243 (14%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||| ||||| ||||| |||| ||||||||||| | | | ||| | || Sbjct 13277 TTTACTTTGAACAAATTTGAGTGCTCAAGGCAGGCCTTTGTACCTAGAAATT--CTTG-- 13222 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 || ||||||||| | |||||||||||||||||||| || | Sbjct 13221 --CATGGAATAGGAC-TTCGGTTCTATTTTGTTGGTTT------------------TTGA 13183 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG- 252 |||| ||||| | ||| ||| |||||||||||||| ||| | || | Sbjct 13182 CAGGG------GGGGGCATTTCTATGGCGGTGTTAGAGGTGAAATTCTCGGA-TCATCGC 13130 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | || |||||| || ||| | || ||||| ||||||||||| ||||| | ||||||| Sbjct 13129 CAAACAAACTACAGCAAAAACATTTGCCAAGAATGTTTTCATTGATCAG-CAGCGAAAGT 13071 Query 313 TAG 315 || Sbjct 13070 CAG 13068 >seq37230 Length=5292 Score = 75.2 bits (82), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 92 GAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA--GCATGGAATAATAGAATAGGACG 149 ||||| |||| | ||||||||| | | | ||| |||||||||||| |||||||| Sbjct 1633 GAGTGCTCAAGGTAGGCCTTTGTGCCTAGAAATTCTGGCATGGAATAATGAAATAGGACT 1692 Query 150 TGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGG 208 | | |||||||||||||||||| | | | ||| ||| || |||| ||| | || ||||| Sbjct 1693 T-CAGTTCTATTTTGTTGGTTT-TCGCATCCGAAGTAGTGGTTAAGAGGCACAGACGGGG 1750 Query 209 G 209 | Sbjct 1751 G 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913476046912