Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq124733 118 1e-24 seq30154 98.7 1e-18 seq1031 89.7 5e-16 seq12997 78.8 1e-12 seq1601 77.0 3e-12 seq12985 73.4 4e-11 >seq124733 Length=1102 Score = 118 bits (130), Expect = 1e-24 Identities = 134/178 (75%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT----TGCTCGAATACATTACCA 68 ||||||||||||||||||||| ||||||||||||| || || ||||| || Sbjct 154 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATTCACAAGCCTGAATAATGGTGCA 213 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||| ||||||||| | |||||||||||||| ||||| | || | |||||| Sbjct 214 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACTGGAGGTAATG 272 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 273 ATTAACAGGGACAAACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 330 >seq30154 Length=6371 Score = 98.7 bits (108), Expect = 1e-18 Identities = 133/178 (75%), Gaps = 8/178 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG---CTCGAATACATTACCAT 69 ||||||||||| ||||| || | |||| |||||||||| || ||| ||| ||| Sbjct 336 TTTACTTTGAACAAATTTAAGTGCTCAAGACAGGCCTTTGTGCCTAGAAATTCTTA-CAT 278 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGA-CCGCCCGTAATG 128 |||||||| |||||||| | |||||||||||||| ||||| | ||| ||| | ||||| Sbjct 277 GGAATAATGAAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAC-TAATG 221 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| || |||||| | |||| ||| | |||||||||||| |||| Sbjct 220 GTTAAGAGGGACAGACGGGGGCATTTGTATAGCGGTGTTAGAGGTGAAATTCTGGGAT 163 >seq1031 Length=31827 Score = 89.7 bits (98), Expect = 5e-16 Identities = 128/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC--CATG 70 ||||||||||| |||| | | | |||| | ||||||||| | | | ||| |||| Sbjct 21584 TTTACTTTGAACAAATGTGGGTGCTCAAGGAAGGCCTTTGTGCCTAGAAATTCTTGCATG 21525 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| |||||||| | ||||||||||||| |||| | ||| | |||||||| Sbjct 21524 GAATAATGAAATAGGACTTT-GGTTCTATTTTGTTTGTTT-TCGGATCCGAAGTAATGAT 21467 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || |||||| | |||| ||| | |||||||||||| ||||| Sbjct 21466 TAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTCGGATT 21410 >seq12997 Length=11466 Score = 78.8 bits (86), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTA-GAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC--CAT 69 ||||||||||| ||||| ||| | |||| ||||||||||| | | | ||| ||| Sbjct 2558 TTTACTTTGAACAAATTTTGAGTGCTCAAGGCAGGCCTTTGTGCCTAGAAATTCTTGCAT 2617 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| |||||||| | |||||||||||||| ||||| Sbjct 2618 GGAATAATGAAATAGGACTT-CGGTTCTATTTTGTTGGTTT 2657 >seq1601 Length=27832 Score = 77.0 bits (84), Expect = 3e-12 Identities = 126/177 (71%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG---CTCGAATACATTACCAT 69 ||||||||||| |||| || | | || |||||||||| || ||| | || ||| Sbjct 11007 TTTACTTTGAACCAATTTGAATGCTTAAGACAGGCCTTTGTGCCTAGAA-ATTTTTGCAT 11065 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 | |||||| |||||||| | |||||||||||||| |||||| ||| | || | | Sbjct 11066 GAAATAATGAAATAGGACTT-CGGTTCTATTTTGTTGGTTTC-CGGATCCGAAGTTAAGG 11123 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| || |||||| | |||| ||| | |||||||||||| |||| Sbjct 11124 TTAAGAGGGAGAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGAT 11180 >seq12985 Length=11470 Score = 73.4 bits (80), Expect = 4e-11 Identities = 124/176 (70%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACAT--TACCATG 70 ||||||||| | ||||| ||| | |||| ||||||||||| | | | || | |||| Sbjct 9285 TTTACTTTGCACAAATTTGAGTGCTCAAGGCAGGCCTTTGTGCCTAGAAATTCTTGCATG 9344 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| || | ||| | | ||||||| | || ||||| | ||| | |||||| | Sbjct 9345 GAATAATGAAAGAAGAC-TTCAGTTCTATATGGTTGGTTT-TCGGATCCGAAGTAATGGT 9402 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | ||| || |||||| | |||| |||| | ||||||||| || |||| Sbjct 9403 TAGGAGGGACAGACGGGGGCATTTGTATGGCTTTGTTAGAGGTGAAATACTGGGAT 9458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511065689760