Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq124733 205 2e-50 seq13233 178 2e-42 seq1804 165 2e-38 seq62404 161 2e-37 seq39205 159 7e-37 seq12997 154 3e-35 seq11368 118 2e-24 seq129929 113 9e-23 seq12202 113 9e-23 seq8561 113 9e-23 seq94476 87.8 3e-15 seq1757 87.8 3e-15 seq87402 86.0 1e-14 >seq124733 Length=1102 Score = 205 bits (226), Expect = 2e-50 Identities = 205/260 (79%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| ||| || ||| |||||||||||||||| Sbjct 825 CTTCTTAGAGGGACGAGTGGCGTTTAGCCACACGAAATT-GAG-CAATAACAGGTCTGTG 882 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG--TTCAT 188 |||||||||||||| | ||||||||||||||||||||||| || || || | | | | Sbjct 883 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGGATGCCT 942 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | ||| | ||| |||| ||||| || | | || ||| ||||||| ||||| | | | Sbjct 943 C-CCTGGCCCGAAAGGGCTGGGAAACCCGTTGAATCTCCTTCGTGCTAGGGATTGGGGCT 1001 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || |||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||| Sbjct 1002 TGTAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGA 1061 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 1062 TTACGTCCCTGCCCTTTGTA 1081 >seq13233 Length=11326 Score = 178 bits (196), Expect = 2e-42 Identities = 199/262 (76%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| || | || || || ||| || ||| ||||||||||||| Sbjct 357 CTTCTTAGAGGGACAGACGACACATCGAAGTCGTACGAAATT-GAG-CAATAACAGGTCT 300 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||||| ||||||||||| | ||||| |||| |||||||| |||| | |||| |||||| Sbjct 299 GTGATACCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTTTG 240 Query 188 TCACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | | ||||| ||| || |||| || || || | | | |||||| ||||| | | Sbjct 239 GGAACCTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGG 180 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||||||||||| | | | |||||||||| ||| ||||| || ||||| ||| ||| | Sbjct 179 CTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCT 120 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 119 GATTACGTCCCTGCCCTTTGTA 98 >seq1804 Length=26765 Score = 165 bits (182), Expect = 2e-38 Identities = 173/222 (78%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGG-GCCGCACGCGCGCTACAC 167 ||||| |||||||||||||||||||||||||||||| ||| ||| |||| |||||||| Sbjct 14504 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGT-CTGAAGCCACACGTGCGCTACAA 14561 Query 168 TGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226 |||| | |||| ||||| | |||| | ||| |||| |||| || || || | | | Sbjct 14562 TGACGGTGCCAGCGAGTCTGGGAACCTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCAC 14621 Query 227 TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 |||||| ||||| | | ||||||||||| | | | |||||||||| ||| ||||| Sbjct 14622 CGTCGTGACTGGGATCGGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGT 14681 Query 287 GCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||| ||| ||| ||||||||||| ||||||||||| Sbjct 14682 GCAAGTCATAAGCTTGCGCTGATTACGTCCATGCCCTTTGTA 14723 >seq62404 Length=3035 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| ||| || || ||| || ||| ||||||||||||||| Sbjct 268 CTTCTTAGAGGGACAGACGGAGACAGACGTACGAAATT-GAGA-AATAACAGGTCTGTGG 325 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCA 190 ||||||||||||| | ||||| |||| ||||| || || | | |||| ||||| | | Sbjct 326 TGCCCTTAGATGTCCGGGGCCACACGTGCGCTTCAATGTCGGTGCCAGCGAGTCTGGGAA 385 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||| || || || | | | |||||| ||||| | | ||| Sbjct 386 CCTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGGCTTG 445 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| ||| ||||| || ||||| || ||| ||||| Sbjct 446 CAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAGGCCTGCGCTGATT 505 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 506 ACGTCCCTGCCCTTTGTA 523 >seq39205 Length=5034 Score = 159 bits (176), Expect = 7e-37 Identities = 165/215 (77%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||||||||||||||||||||||| | | ||||| ||| |||||||| |||| | Sbjct 1806 CAATAACAGGTCTGTGATGCCCTTAGATATCCGGGGCCACACATGCGCTACAATGACGGT 1747 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | || ||||| | | | ||||| ||| || | || || || || | | |||||||| Sbjct 1746 GTCAGCGAGTCTAGGAACCTGGCCCGAAAGGGTTAGGCAAACTGTTTCATCACTGTCGTG 1687 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 |||||| | | ||||||||||| | | | |||||||||| |||| |||| || ||| Sbjct 1686 ACGGGGATCGGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTACTAAGTGCAAGTC 1627 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||| ||| |||||| |||||||||||| Sbjct 1626 ATAAGCTTGCGCTGACTACGTCTCTGCCCTTTGTA 1592 >seq12997 Length=11466 Score = 154 bits (170), Expect = 3e-35 Identities = 164/215 (76%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||||||||||||||||||||||||| | | ||| |||| |||||||| |||| | Sbjct 2718 CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGAGCCACACGTGCGCTACAATGACGGT 2777 Query 175 GCCAACGAGTTCATCA-CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 |||| ||||| | | ||| | ||| |||| | || || || || | | | ||| || Sbjct 2778 GCCAGCGAGTCTAGGATCCTGGCCCGAAAGGGTTAGGCAAACTGTTTCATCACCGTCATG 2837 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||| ||| || |||||||| | | | || ||||||| ||| ||||| | ||| Sbjct 2838 ACTGGGATCGAGGCTTACAATTATTCCGCGTGAAAGAGGAATTCCTGGTAAGTGAAAGTC 2897 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||| ||||||||||||||||||||||| Sbjct 2898 ATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 2932 >seq11368 Length=12381 Score = 118 bits (130), Expect = 2e-24 Identities = 161/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| ||| ||||||||| ||||| |||||||||| | ||||| |||| |||||||| | Sbjct 4597 TTGAG-CAACAACAGGTCTTTGATGTCCTTAGATGTCC-GGGCCACACGTGCGCTACAAT 4654 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGC-CGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 ||| | ||| | ||| | | |||| || |||| ||| | || || | | | Sbjct 4655 GACGGTTCCAGCTAGTCTGGGAACCTGGCTCGAAAGGGTTGGCCCAACTGTTTCATCACC 4714 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||| ||||| | | |||| | |||| | | | ||| |||||| ||| ||||| | Sbjct 4715 GTCGTGACTGGGATCGGGGCTTGCGACTATTCCCCGTGAACCAGGAATTCCTGGTAAGTG 4774 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||| ||||||||| |||||||||||| Sbjct 4775 CAAGTCATAAGCTTGCGCTGATTACGTTTCTGCCCTTTGTA 4815 >seq129929 Length=1021 Score = 113 bits (124), Expect = 9e-23 Identities = 151/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||| || |||||||||||||||||| | || || |||| |||||||| |||| | Sbjct 345 CAATAACATGTATGTGATGCCCTTAGATGTCCGGGACCACACGTGCGCTACAGTGACGGT 286 Query 175 GCCAACGAGTT-CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 |||| |||||| | || | | ||| ||| ||||| || | || | | ||||| Sbjct 285 GCCAGCGAGTTGGAGAACGTGGCCCGAAAGAGCTGGGCAAGCGGTTTCATCAGCATCGTG 226 Query 234 -CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 |||| | ||| | |||||||||| | | | ||||| |||| ||| ||||| || || Sbjct 225 ACTGGTATTGGAG-ACTGCAATTATTCCCCGTGAACGACGAATTCCTGGTAAGTGCAAGT 167 Query 293 CATCAGCACGCGTTGATTACGTCCCT 318 ||| ||| ||| ||||| |||||| Sbjct 166 CATAAGCTTGCGCTGATTGTGTCCCT 141 >seq12202 Length=11907 Score = 113 bits (124), Expect = 9e-23 Identities = 177/249 (71%), Gaps = 7/249 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 ||||||||||| ||| |||| || || || ||| || || |||||||| |||| Sbjct 2811 CTTCTTAGAGGAACTGACGGCACATTGAAGTCGTACGAAATT-GAT-CAATAACAAGTCT 2754 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||| ||||| | ||||| || | || ||||| ||| | |||| ||||| | Sbjct 2753 GTGATGCCCTTGGATGTCCGGGGCCACATGTGCACTACAAAGACGGTGCCAGCGAGTCTA 2694 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | |||| | ||| |||| ||||| || | || | | | |||||| | ||||| | | Sbjct 2693 AGAACCTGGCCCGAAAGGGCTGGGCAAAATATTTTATCACCGTCGTGATTGGGATCGGGG 2634 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 | | ||||| ||| | |||||||||| || || || || || || ||| ||| | Sbjct 2633 CCTCAATTTATTTCTCGTGAACGAGGAATTTCTGGTCAGTGCAAGTGATAAGCTTGCGCT 2574 Query 307 GATTACGTC 315 |||||| || Sbjct 2573 GATTACATC 2565 >seq8561 Length=14414 Score = 113 bits (124), Expect = 9e-23 Identities = 165/231 (71%), Gaps = 12/231 (5%) Strand=Plus/Minus Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167 |||||| |||||||||| |||||||| ||||| |||| | ||||| |||| |||||||| Sbjct 9068 TTTGAG-CAATAACAGGACTGTGATGTCCTTAAATGTCCGGGGCCACACGTGCGCTACAA 9010 Query 168 TGACAGAGCC--AACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||| | ||| |||| | | |||| | | | |||| ||||| | || | | | Sbjct 9009 TGACGGTGCCAGAACGTCTGGA-AACCTGGCCTGAAAGGGTTGGGTGAACTGTCTCATCA 8951 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | |||||| ||||| | | ||||||||||| | | | |||||||||| || |||| Sbjct 8950 CCGTCGTGACTGGGATCGGGGTTTGCAATTATTCCCCATGAACGAGGAATTTCTGGTAAT 8891 Query 286 CGCGTGTCATCAGCACGCG--------TTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||| ||||||| ||||||||||||||| Sbjct 8890 TGAAAGTCATAAGCTTGCGCTTCCGAAATGATTACCTCCCTGCCCTTTGTA 8840 >seq94476 Length=1725 Score = 87.8 bits (96), Expect = 3e-15 Identities = 123/171 (72%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 159 GCGCTACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||||||| ||| |||||| ||||| | |||| | ||| |||| |||| || || Sbjct 884 GCGCTACAATGAGGGAGCCAGCGAGTCTGGGAACCTGGCCCGAAAGGGTTGGGCAAACTG 943 Query 218 GTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGC 277 || | | | || ||| ||||| | | |||| ||||| | | | |||||||||| | Sbjct 944 TTTCACCACCGTTGTGACTGGGATCGGGACATGCAGTTATTCCCCGTGAACGAGGAATTC 1003 Query 278 CTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || || || ||||| ||| ||| ||||||||||||||||||||||| Sbjct 1004 CTGGT----GCAAGTCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 1050 >seq1757 Length=27001 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | ||||| || | |||||||| |||| | Sbjct 23248 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCCACATGTGCGCTACAATGACGG 23189 Query 174 AGCCAACGAGT 184 |||| ||||| Sbjct 23188 TGCCAGCGAGT 23178 >seq87402 Length=1933 Score = 86.0 bits (94), Expect = 1e-14 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| |||| |||| || || || | | | || || | |||| | | ||||||||| Sbjct 693 CCGAAAGGGTTGGGCAAACTGTTTCATCACCATCATGACGAGGATCGGGGTTTGCAATTA 634 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || | | | |||||||||| ||| | ||| || ||||| ||| ||| ||||||||||| Sbjct 633 TTTCCCGTGAACGAGGAATTCCTGGAAAGTGCAAGTCATAAGCTTGCGCTGATTACGTCC 574 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 573 CTGCCCTTTGTA 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945415768832