Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq35556 82.4 1e-13 seq22297 82.4 1e-13 seq109600 77.0 5e-12 seq40732 77.0 5e-12 seq157205 73.4 6e-11 seq16104 73.4 6e-11 >seq35556 Length=5524 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| ||||||| | || | ||| ||| | || | Sbjct 2702 GTACGAGAGGAACCACA-AGTTCAGAC-AATTGGTATATGTGCCTGGTTGAAAGGCCAAT 2645 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| | ||| |||||| | ||||||||||||||||| |||||| Sbjct 2644 GGTGCGAAGCTACTACCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 2591 >seq22297 Length=8082 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| | | |||||| ||||||| | |||| ||| || | || | Sbjct 4518 GTATGAGAGGAACCACAGG-TTCAGAC-AATTGGTATGTGCGCCTGGTCGAAAGGCCAAT 4461 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 4460 GGTGCGAAGCTACCATCTAAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 4407 >seq109600 Length=1362 Score = 77.0 bits (84), Expect = 5e-12 Identities = 85/111 (77%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 4 CGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCC 63 ||||||||||||| | |||||| ||||||| | || | ||| || | || || Sbjct 1 CGAGAGGAACCGCAGG-TTCAGAC-AATTGGTATATGTGCCTGGTCGAAAGGCCAATGGT 58 Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||| ||||||||| ||| || | ||||||||||||||||| |||||| Sbjct 59 GCGAAGTTACCATCTGAGGGACTAAGACTGAACGCCTCTAAGTCTGAATCC 109 >seq40732 Length=4848 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| ||| | || ||| ||||||| | || | ||| ||| | || | Sbjct 1971 GTACGAGAGGAATCGCAGG-TTAAGAC-AATTGGTATATGTGCCTGGTTGAAAGGCCAAT 1914 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| ||||||| |||||| | ||||||||||||||| | |||||| Sbjct 1913 GGTGCGAAGCTGCCATCTGAGGGATTAAGACTGAACGCCTCTAAGCCTGAATCC 1860 >seq157205 Length=733 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| | ||||||| | || | ||| || | || | Sbjct 595 GTACGAGAGGAACCGAAGG-TTCATAC-AATTGGTATATGTGCCTGGTCGAAAGGCCAAT 538 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 537 GGTGTGAAGCTACCATCTTAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 484 >seq16104 Length=10076 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||| || | || | ||| || | || | Sbjct 3658 GTACGAGAGGAACCGCAGG-TTCAGAC-AATTAGTATATGTGCCTGGTCGAAAGGCCAAT 3715 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||| |||||| ||||| | || |||||||||||||| |||||| Sbjct 3716 GGTGCGAAGCTAACATCTGAGAGATTAAGACTAAACGCCTCTAAGTCTGAATCC 3769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 817705103616