Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09-
24] 188,369 sequences; 701,762,036 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq7169 176 4e-39
seq28879 163 2e-35
>seq7169
Length=15740
Score = 176 bits (194), Expect = 4e-39
Identities = 524/801 (65%), Gaps = 22/801 (3%)
Strand=Plus/Minus
Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104
||||| | || || ||| | ||||| || | ||| | ||| |||||| | || ||
Sbjct 6979 AATCCGCACCGATTTGTACTTTTCCCAATACAATATCACGATGTTTGGCAGTTTTATAAG 6920
Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164
|| || | ||| || |||||||| ||||| || || ||||| ||||| ||| | |||
Sbjct 6919 AAAGCTGTAGCATCGTTCTGGACTGTGGAAGAAGTAGATTTATCCAAGGACTTAGTTGAT 6860
Query 61165 TGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGC 61223
||||| | | | | | || |||| ||||| || | | ||||| || ||||| ||
Sbjct 6859 TGGGACTCCCTCAAAGTG-GGAGAACGTCATTTTATATCATACGTGTTAGCATTCTTCGC 6801
Query 61224 CGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGT 61283
|| || || ||||| |||||| ||| | |||||||| || || ||||| |
Sbjct 6800 TGCAAGTGATGGAATCGTTCTTGAGAACTTACTAGAACGTTTTAGTCAAGAAGTGCAGAT 6741
Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGAT 61343
| || | ||||||||||| || | ||||| || || |||||| | ||||| || ||
Sbjct 6740 CCCCGAAGTCCGTTGTTTCTATGGTATGCAGATAGCTATTGAGAATATACACTCCGAAAT 6681
Query 61344 GTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT----TGT 61399
|||| | | ||||| || || || ||||| ||| | || ||| | |
Sbjct 6680 GTACTCCTTATTAATCGACACATATATTAGGGA----CTCGAAAGAGAGAGATTTCCTTT 6625
Query 61400 TCAATGCCATCGAGACGATACC--GGCGGTGAAGC--GGAAAGCGGATTGGGCCTTCAAT 61455
||||||| || | | ||| | ||| || ||| || | ||||| | |
Sbjct 6624 TCAATGCAAT----AAGTAACCTGGATTGTGTTGCTAAGAAGGCTCAGTGGGCACTGGAC 6569
Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515
|||||| | | | | |||| |||| ||||| | | || ||||| | ||||||
Sbjct 6568 TGGATCGGTGATTCTAAGTCTACGTTTGCAGAACGTCTAGTCGCTTTTGCAGCAGTCGAG 6509
Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575
||||| |||||| ||| ||||| || ||||||||| | ||||| || |||||||||
Sbjct 6508 GGTGTGTTTTTCTCTGGTAGTTTTGCGGCTATCTTTTGGCTAAAGAAGCGAGGACTTATG 6449
Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635
|| || ||| | ||||| ||||| | ||| | || ||||| |||||||||| ||
Sbjct 6448 CCGGGGCTGTCATTCAGTAATGAACTCATAAGCAGAGATGAGGGATTGCATTGTGACTTC 6389
Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695
||| | | || || |||| | | ||||| || | | ||||| | | |
Sbjct 6388 GCTTGTCTCCTGTTTAAAC---ACATAGTGAAGAAGCCTCCTAAAGAGCGCATTGAGTTG 6332
Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755
||| | || || || || |||||| | ||| || | || ||| | || ||
Sbjct 6331 ATTATGAAAGAAGCTGTCGTGATAGAACAGCAGTTTTTGTCGGAAGCTCTACCTGTTAGC 6272
Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815
|| || || |||||||| | |||||| || || ||||| || | || || || |||
Sbjct 6271 CTGATAGGAATGAATTGCAAATTAATGTGCCAATACATTGAGTTCATCGCTGATCGACTG 6212
Query 61816 TTGGTCG-ATTTGGGTATGAA 61835
|| || | | |||| ||||||
Sbjct 6211 TTAGTTGAACTTGGTTATGAA 6191
>seq28879
Length=6601
Score = 163 bits (180), Expect = 2e-35
Identities = 244/344 (71%), Gaps = 2/344 (1%)
Strand=Plus/Minus
Query 66198 GTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCG 66256
||||||| || || || | ||| | ||||| ||||| || ||||| || || ||||
Sbjct 3926 GTGCCTTGACTGTTTGT-CTGCCACGACCTTCTCGTTCATATTGTTCATAAAGAGCTTCG 3868
Query 66257 AAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA 66316
|| ||||||||||| ||| | || || |||||| | || ||| ||||| | |||
Sbjct 3867 AACTCTTCACCCCATAGTTCTGGCAAACCTGGACATTCATGAGGATCCATCAATGTCCAT 3808
Query 66317 TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376
| | | | ||| ||||||||||| || | ||||||||||| || || |||| | |
Sbjct 3807 TTATCGTTAGCTTCAACACGACGCATGAAAATGTCAGGTATCCATAGAGCAAAGAACAAA 3748
Query 66377 TCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATG 66436
|| || ||||| || ||| ||| ||||||||||| || | |||| ||| |
Sbjct 3747 TCTCGAGCTCGAACTTCTTCAGCGCCTGTATTTTTGCGCATTTCTACAAACTGAAATACA 3688
Query 66437 TCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGG 66496
|||| |||||| ||||||| || || || || | ||| ||||||| ||| |||||
Sbjct 3687 TCGGGATGCCAAGGTTCCAAATACATAGCAAATGCGCCTGGACGTTTGTTGCCTCCTTGA 3628
Query 66497 TCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540
|| || ||||| || |||||| || || ||||||||||| ||
Sbjct 3627 TCAACATAGCGTGCAGTATTGTTAAATACGCGCAACATCGGAAC 3584
Score = 118 bits (130), Expect = 8e-22
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064
|||| || ||| || | |||||||||||| | || ||||||| | ||| || || |||
Sbjct 4601 AGGGAAATAGAGGCTAAATTGCAGACAGCTGTTTCTTCAGGAGACGAATATTCAACGATT 4542
Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124
|| || ||||| || |||||||| || || ||||||| ||| || ||| || ||||||
Sbjct 4541 TCTGTACACAGGTTGCTGCAGCGAATTGTTCCCAAATGCTGATGGTTAGATTTTCGATTG 4482
Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAA 66164
|||||||| || |||| |||| | || |||| || ||||
Sbjct 4481 CATGCATCTTTATACAGCATGAATGGGTTGCCTGTTTCAA 4442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396655284382160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |