Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7169 176 4e-39 seq28879 163 2e-35 >seq7169 Length=15740 Score = 176 bits (194), Expect = 4e-39 Identities = 524/801 (65%), Gaps = 22/801 (3%) Strand=Plus/Minus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 ||||| | || || ||| | ||||| || | ||| | ||| |||||| | || || Sbjct 6979 AATCCGCACCGATTTGTACTTTTCCCAATACAATATCACGATGTTTGGCAGTTTTATAAG 6920 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 || || | ||| || |||||||| ||||| || || ||||| ||||| ||| | ||| Sbjct 6919 AAAGCTGTAGCATCGTTCTGGACTGTGGAAGAAGTAGATTTATCCAAGGACTTAGTTGAT 6860 Query 61165 TGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGC 61223 ||||| | | | | | || |||| ||||| || | | ||||| || ||||| || Sbjct 6859 TGGGACTCCCTCAAAGTG-GGAGAACGTCATTTTATATCATACGTGTTAGCATTCTTCGC 6801 Query 61224 CGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGT 61283 || || || ||||| |||||| ||| | |||||||| || || ||||| | Sbjct 6800 TGCAAGTGATGGAATCGTTCTTGAGAACTTACTAGAACGTTTTAGTCAAGAAGTGCAGAT 6741 Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGAT 61343 | || | ||||||||||| || | ||||| || || |||||| | ||||| || || Sbjct 6740 CCCCGAAGTCCGTTGTTTCTATGGTATGCAGATAGCTATTGAGAATATACACTCCGAAAT 6681 Query 61344 GTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT----TGT 61399 |||| | | ||||| || || || ||||| ||| | || ||| | | Sbjct 6680 GTACTCCTTATTAATCGACACATATATTAGGGA----CTCGAAAGAGAGAGATTTCCTTT 6625 Query 61400 TCAATGCCATCGAGACGATACC--GGCGGTGAAGC--GGAAAGCGGATTGGGCCTTCAAT 61455 ||||||| || | | ||| | ||| || ||| || | ||||| | | Sbjct 6624 TCAATGCAAT----AAGTAACCTGGATTGTGTTGCTAAGAAGGCTCAGTGGGCACTGGAC 6569 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| | | | | |||| |||| ||||| | | || ||||| | |||||| Sbjct 6568 TGGATCGGTGATTCTAAGTCTACGTTTGCAGAACGTCTAGTCGCTTTTGCAGCAGTCGAG 6509 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 ||||| |||||| ||| ||||| || ||||||||| | ||||| || ||||||||| Sbjct 6508 GGTGTGTTTTTCTCTGGTAGTTTTGCGGCTATCTTTTGGCTAAAGAAGCGAGGACTTATG 6449 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 || || ||| | ||||| ||||| | ||| | || ||||| |||||||||| || Sbjct 6448 CCGGGGCTGTCATTCAGTAATGAACTCATAAGCAGAGATGAGGGATTGCATTGTGACTTC 6389 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 ||| | | || || |||| | | ||||| || | | ||||| | | | Sbjct 6388 GCTTGTCTCCTGTTTAAAC---ACATAGTGAAGAAGCCTCCTAAAGAGCGCATTGAGTTG 6332 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 ||| | || || || || |||||| | ||| || | || ||| | || || Sbjct 6331 ATTATGAAAGAAGCTGTCGTGATAGAACAGCAGTTTTTGTCGGAAGCTCTACCTGTTAGC 6272 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 || || || |||||||| | |||||| || || ||||| || | || || || ||| Sbjct 6271 CTGATAGGAATGAATTGCAAATTAATGTGCCAATACATTGAGTTCATCGCTGATCGACTG 6212 Query 61816 TTGGTCG-ATTTGGGTATGAA 61835 || || | | |||| |||||| Sbjct 6211 TTAGTTGAACTTGGTTATGAA 6191 >seq28879 Length=6601 Score = 163 bits (180), Expect = 2e-35 Identities = 244/344 (71%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 66198 GTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCG 66256 ||||||| || || || | ||| | ||||| ||||| || ||||| || || |||| Sbjct 3926 GTGCCTTGACTGTTTGT-CTGCCACGACCTTCTCGTTCATATTGTTCATAAAGAGCTTCG 3868 Query 66257 AAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA 66316 || ||||||||||| ||| | || || |||||| | || ||| ||||| | ||| Sbjct 3867 AACTCTTCACCCCATAGTTCTGGCAAACCTGGACATTCATGAGGATCCATCAATGTCCAT 3808 Query 66317 TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376 | | | | ||| ||||||||||| || | ||||||||||| || || |||| | | Sbjct 3807 TTATCGTTAGCTTCAACACGACGCATGAAAATGTCAGGTATCCATAGAGCAAAGAACAAA 3748 Query 66377 TCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATG 66436 || || ||||| || ||| ||| ||||||||||| || | |||| ||| | Sbjct 3747 TCTCGAGCTCGAACTTCTTCAGCGCCTGTATTTTTGCGCATTTCTACAAACTGAAATACA 3688 Query 66437 TCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGG 66496 |||| |||||| ||||||| || || || || | ||| ||||||| ||| ||||| Sbjct 3687 TCGGGATGCCAAGGTTCCAAATACATAGCAAATGCGCCTGGACGTTTGTTGCCTCCTTGA 3628 Query 66497 TCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 || || ||||| || |||||| || || ||||||||||| || Sbjct 3627 TCAACATAGCGTGCAGTATTGTTAAATACGCGCAACATCGGAAC 3584 Score = 118 bits (130), Expect = 8e-22 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 |||| || ||| || | |||||||||||| | || ||||||| | ||| || || ||| Sbjct 4601 AGGGAAATAGAGGCTAAATTGCAGACAGCTGTTTCTTCAGGAGACGAATATTCAACGATT 4542 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || || ||||| || |||||||| || || ||||||| ||| || ||| || |||||| Sbjct 4541 TCTGTACACAGGTTGCTGCAGCGAATTGTTCCCAAATGCTGATGGTTAGATTTTCGATTG 4482 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAA 66164 |||||||| || |||| |||| | || |||| || |||| Sbjct 4481 CATGCATCTTTATACAGCATGAATGGGTTGCCTGTTTCAA 4442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396655284382160