Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1265 145 1e-32 seq1133 141 1e-31 seq158 141 1e-31 seq708 134 2e-29 seq249 132 7e-29 seq813 123 4e-26 seq136 123 4e-26 seq411 120 5e-25 seq641 105 1e-20 seq1389 96.9 5e-18 seq1141 82.4 1e-13 >seq1265 Length=56461 Score = 145 bits (160), Expect = 1e-32 Identities = 172/227 (76%), Gaps = 12/227 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| ||| || | ||| ||| |||| |||| ||||||||||| | Sbjct 4775 GTACAAAGGGCAGGGATGTAATCGAGGCGG--TTGGTGACCGGCGCCTACTAGGAATT-C 4831 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAA----- 114 |||||| ||||| |||||||| | ||| |||||| ||| | || || ||| Sbjct 4832 CTCGTTCAAGACGAACAATTGTAGCCATCATTCCCCAGCACAAATGCCGTTGCAAGGTCG 4891 Query 115 AGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174 || || |||| || | || | || ||||||| || | ||||||||||||| Sbjct 4892 AGCTTCCCCG--CCAGCAGGAACCCGAGA-AGACTCGCTGCAGCGCTCAGTGTAGCGCGT 4948 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 ||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 4949 GTGCGGCCCGGAACATTTAAGGGCATCACAGACCTGTTATTGCCTCA 4995 Score = 82.4 bits (90), Expect = 1e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 ||||||| || | ||||||||||||| |||| ||| |||||||||||||||||||| Sbjct 3136 AGACTCGCTGCAGCGCTCAGTGTAGCGCGTGTGCTGCCTGGAACATCTAAGGGCATCACA 3195 Query 205 GACCTGTTATTGC 217 | ||||||||||| Sbjct 3196 GCCCTGTTATTGC 3208 >seq1133 Length=75797 Score = 141 bits (156), Expect = 1e-31 Identities = 172/227 (76%), Gaps = 13/227 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||| | || || |||| || ||| |||| |||| ||||||||||| | Sbjct 43273 GTACAAAGGGCAGGGGCATAATCGACGCCAG-TTGGTGACCGGCGCCTACTAGGAATT-C 43330 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAA----- 114 |||||| ||||| |||||||||| ||| |||||| || || | ||| ||| Sbjct 43331 CTCGTTCAAGACAAACAATTGCAGCCGTCTTTCCCCAGCATGAACATCATTGCAAGGTTG 43390 Query 115 AGATTACCCGGACCTGTCGGCCAAG-GTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173 || || |||| || ||| | | || |||||| ||| ||||||||||| | Sbjct 43391 AGCTTCCCCG---CTAGCGGGAACCCGAGA-AGACTCATTGCTGCGCTCAGTGTAGCGTG 43446 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||| || |||||||||||||||||||||||||||||||||||| Sbjct 43447 TGTGCGGGCCGGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 43493 >seq158 Length=676796 Score = 141 bits (156), Expect = 1e-31 Identities = 171/227 (75%), Gaps = 12/227 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || |||| | ||| |||| |||| ||||||||||| | Sbjct 664016 GTACAAAGGGCAGGGACGTAATCGACGCCGG-TTGGTGACCGGCGCCTACTAGGAATT-C 663959 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT-GAAATTTCAA----- 114 |||||| |||| || |||||| ||| |||||| ||||| | || ||| Sbjct 663958 CTCGTTCGAGACGGACGATTGCAGCCGTCTGTCCCCAGCACGAACGCCGTTGCAAGGTCG 663899 Query 115 AGATTACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCG 173 || || |||| || ||| | || ||||||| || ||||||||||||| Sbjct 663898 AGCTTCCCCG---CTAGCGGGAAGCCGGACGAGACTCGCTGCGGCGCTCAGTGTAGCGCG 663842 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 663841 CGTGCGGCCCGGAACATCCAAGGGCATCACAGACCTGTTATTGCCTC 663795 Score = 132 bits (146), Expect = 7e-29 Identities = 169/227 (74%), Gaps = 12/227 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || || |||| | ||| |||| |||| ||||||||||| | Sbjct 674728 GTACAAAGGGCAGGGACATAATCGACGCCGG-TTGGTGACCAGCGCCTACTAGGAATT-C 674671 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT-GAAATTTCAA----- 114 |||||| |||| || ||| || ||| |||||| ||||| | || ||| Sbjct 674670 CTCGTTCGAGACGGACGATTACAGCTGTCTGTCCCCAGCACGAACGCCGTTGCAAGGTCG 674611 Query 115 AGATTACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCG 173 || || |||| || ||| | || ||||||| || ||||||||||||| Sbjct 674610 AGCTTCCCCG---CTAGCGGGAAGCCGGACGAGACTCGCTGCGGCGCTCAGTGTAGCGCG 674554 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 | |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 674553 CATGCGGCCCAGAACATCCAAGGGCATCACAGACCTGTTATTGCCTC 674507 >seq708 Length=204443 Score = 134 bits (148), Expect = 2e-29 Identities = 169/226 (75%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || |||| | ||| |||| |||| ||||||||||| | Sbjct 8399 GTACAAAGGGCAGGGACGTAATCGACGCCGG-TTGGTGACCGGCGCCTACTAGGAATT-C 8342 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT-GAAATTTCAA----- 114 |||||| |||| || |||||| ||| |||||| ||||| | || ||| Sbjct 8341 CTCGTTCGAGACGGACGATTGCAGCCGTCTGTCCCCAGCACGAACGCCGTTGCAAGGTCG 8282 Query 115 AGATTACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCG 173 || || |||| || ||| | || ||||| | || ||||||||||||| Sbjct 8281 AGCTTCCCCG---CTAGCGGGAAGCCGGACGAGACTTGCTGCGGCGCTCAGTGTAGCGCG 8225 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219 |||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 8224 CGTGCGGCCCGGAACATCCAAGGGCATCACAGACCTGTTATTGCCT 8179 >seq249 Length=509689 Score = 132 bits (146), Expect = 7e-29 Identities = 170/227 (75%), Gaps = 13/227 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| ||| ||||||| | ||| |||| |||| ||||||||| ||| Sbjct 384673 GTACAAAGGGCAGGGATGTAATCAACGCCCG-TTGGTGACCGGCGCCTACTAGGAA-TTC 384730 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAA----- 114 ||||| ||||| |||||||||| ||| |||||| |||| | | ||| ||| Sbjct 384731 TTCGTTCAAGACGAACAATTGCAGCCGTCTTTCCCCAGCACGAACGCCATTGCAAGGTCG 384790 Query 115 AGATTACCCGGACCTGTCGGCCAAGGTGA-TAGACTCGTTGAATACATCAGTGTAGCGCG 173 || || |||| || ||| || ||| ||||||| || ||||||||| ||| Sbjct 384791 AGCTTCCCCG---CTAGCGG-GAACCTGAGGAGACTCGCTGTGGCGCTCAGTGTAGTGCG 384846 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||| |||| ||| ||||||||||||||||||||||||| ||| || Sbjct 384847 TGTGTGGCCTGGAAGATCTAAGGGCATCACAGACCTGTTAATGCTTC 384893 >seq813 Length=160490 Score = 123 bits (136), Expect = 4e-26 Identities = 168/227 (74%), Gaps = 17/227 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||| |||| || | ||| |||| |||| ||||||||| || Sbjct 130103 GTACAAAGGGCAGGGACGTGATCAAAGC-CGGTTGGTGACCAGCGCCTACTAGGAA-CTC 130046 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAA----- 114 |||||| ||||| |||||||||| ||| |||||| |||| | | || ||| Sbjct 130045 CTCGTTCAAGACAAACAATTGCAGCCGTCTTTCCCCAGCACGAACGCCGTTGCAAGGTGG 129986 Query 115 AGATTACCCGGACCTGTCGGCCAAGGTGA-TAGACTCGTTGAATACATCAGTGTAGCGCG 173 || || |||| || ||| || || ||||| | || ||||||||||||| Sbjct 129985 AGCTTCCCCG---CTAGCGG-GAACCCGAGAAGACTTGCTGTGGCGCTCAGTGTAGCGCG 129930 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||| ||||||||||||||||||||||| |||| Sbjct 129929 TGTGCGGCCCAGAAC----AAGGGCATCACAGACCTGTTATTACCTC 129887 >seq136 Length=742492 Score = 123 bits (136), Expect = 4e-26 Identities = 168/228 (74%), Gaps = 15/228 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||||||| || |||| | | | |||| | || ||||||||||| | Sbjct 600621 GTACAAAGGTCAGGGACGTAATCGACGCCGGGTGG-TGACCGGTGCCTACTAGGAATT-C 600678 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-------TGAAATTTCA 113 ||||| ||||| |||||||||| ||| |||||| ||| | || || ||| Sbjct 600679 TTCGTTCAAGACGAACAATTGCAGCCCTCTTTCCCCAGCACAAACGCCGTTGCAAGGTCA 600738 Query 114 AAGATTACCCGGACCTGTCGGCCAAG-GTGATAGACTCGTTGAATACATCAGTGTAGCGC 172 | | || |||| || ||| | | || ||||||| || |||| ||||||| Sbjct 600739 A-GCTTCCCCG---CTAGCGGGAACCCGAGA-AGACTCGCTGCGGCGCTCAGCGTAGCGC 600793 Query 173 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 | ||| ||||| ||| |||||||||||||||||||||||||||||||| Sbjct 600794 GTGTGTGGCCCGGAATATCTAAGGGCATCACAGACCTGTTATTGCCTC 600841 >seq411 Length=362868 Score = 120 bits (132), Expect = 5e-25 Identities = 165/221 (75%), Gaps = 11/221 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| | |||| || ||| |||| |||| |||||||| |||| Sbjct 100520 GTACAAAGGGCAGGGACGTAAACGACGC-AGGTTGGTGACCGGCGCCTACTAGGA-TTTC 100463 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || || ||||| ||||||||||| | | || || | | || || || | | || Sbjct 100462 CTTCTTCAAGACAAACAATTGCAACCAGC-ATGAACACC--GTTGCAAGGTCGA-GCTTG 100407 Query 121 CCCGGACCTGTCGGCCAAGGTGATA-GACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| || ||| || ||| | ||||| ||| ||||||||||||| | ||| Sbjct 100406 CCCA---CTAGCGGG-AACCTGAGAAGACTCTTTGCGGGGCTCAGTGTAGCGCGTGGGCG 100351 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||| ||| |||||||||||||||||||||||||||| ||| Sbjct 100350 GCCCGGAATATCTAAGGGCATCACAGACCTGTTATTGTCTC 100310 >seq641 Length=230097 Score = 105 bits (116), Expect = 1e-20 Identities = 128/170 (75%), Gaps = 11/170 (6%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAA-- 114 ||||||||| ||||| |||||||||| | || |||||| ||||| || || ||| Sbjct 100750 TTCCTCGTTCAAGACGAACAATTGCAGCGGTCCTTCCCCAACACGAATGCCGTTGCAAGT 100691 Query 115 ---AGATTACCCGGACCTGTCGGCCAAG-GTGATAGACTCGTTGAATACATCAGTGTAGC 170 || || |||| || ||| | | || ||||||| || | |||||||||| Sbjct 100690 TCGAGCTTCCCCG---CTAGCGGGAACCCGAGA-AGACTCGCTGCAGCGCTCAGTGTAGC 100635 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||| ||| ||||| |||||||||||||| ||||||||||||||||||||| Sbjct 100634 GCGTGTGTGGCCCGGAACATCTAAGGGCTTCACAGACCTGTTATTGCCTC 100585 >seq1389 Length=43855 Score = 96.9 bits (106), Expect = 5e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 11811 TCAGTGTAGCGCGTGTGCGGTCCAGAACATCAAAGGGCATCACAGACCTGTTATTGCCTC 11752 Query 221 A 221 | Sbjct 11751 A 11751 >seq1141 Length=74593 Score = 82.4 bits (90), Expect = 1e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 || |||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||| Sbjct 18545 TCCGTGTAGCGCGTGTGCGGCCCTAAACATCTAGGGGCATCACAGACCTGTTACTGCCTC 18604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751982363015