Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq158 167 1e-38 seq1586 96.9 1e-17 seq872 87.8 7e-15 >seq158 Length=676796 Score = 167 bits (184), Expect = 1e-38 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 665356 TGGGACCCGAAAGATGGTGAACTATGCTCGAAGAGGGTGAAGCCAGAGGAAACTCTGGTG 665415 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||| ||||||||| ||||||||||||||||| ||||| | |||||||||| Sbjct 665416 GAGGCCCGCCGCGGTTCTGACGTGCAAATCGATCGTCGCATTTGAGCATAGGGGCGA 665472 Score = 158 bits (174), Expect = 5e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 676075 TGGGACCCGAAAGATGGTGAACTATGCTAGAAGAGGGTGAAGCCAGAGGAAACTCTGGTG 676134 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||| ||||||||| || |||||||||||||| ||| | | |||||||||| Sbjct 676135 GAGGCCCGCCGCGGTTCTGAGGTACAAATCGATCGTCACATTCGAGCATAGGGGCGA 676191 Score = 116 bits (128), Expect = 2e-23 Identities = 113/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||||||||||| |||||| | || | ||| |||| | | | || || ||| | Sbjct 664776 GAGTCGGGTTGTTTGGGATTGCAGCCCAAAGACGGGTGGTAGACTCCATCCAAGGCTCGA 664835 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 664836 TACGGGCGCGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGAACTTTGAA 664895 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 ||||||||| || || ||||||| Sbjct 664896 AAGAGAGTTCAACAGTGCGTGAAA 664919 Score = 104 bits (114), Expect = 1e-19 Identities = 110/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||||||||||| |||||| | || | ||| |||| | | | || || ||| | Sbjct 675497 GAGTTGGGTTGTTTGGGATTGCAGCCCAAAGACGGGTGGTAGACTCCATCCAAGGCTCGA 675556 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| ||| ||||| ||||||| |||||| | Sbjct 675557 TACTGGTGCGAGACCGATAGCGAACAAGTACCATGAGGGAAAGTTGAAAAGAACTTTGAA 675616 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||| || || || ||||||| Sbjct 675617 AAGAGACTTCAACAGTGCGTGAAA 675640 >seq1586 Length=26971 Score = 96.9 bits (106), Expect = 1e-17 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||||||| ||| |||||| ||| | |||| ||||||||||||||||| | Sbjct 3755 TGGAACCCGAAAGATGGCGAAATATGCCCGAAGAAGGTGGAGCCAGAGGAAACTCTGTTA 3814 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||||||| | | ||||| ||||||||| ||| Sbjct 3815 CAGGCTCGTTGTGATTCTGACGTGCAAATGGAT 3847 >seq872 Length=139135 Score = 87.8 bits (96), Expect = 7e-15 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||| ||| ||| |||||| || | |||| ||||||||||||||||| | Sbjct 400 TGGAACCCGAAAGCTGGCGAAATATGCCCCAAGAAGGTGGAGCCAGAGGAAACTCTGTTA 459 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||||||| | | ||||| ||||||||| ||| Sbjct 460 CAGGCTCGTTGTGATTCTGACGTGCAAATGGAT 492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079948069550