Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq158 174 3e-41 seq708 98.7 2e-18 seq1389 96.9 6e-18 seq1265 96.9 6e-18 seq1133 91.5 2e-16 seq641 91.5 2e-16 seq411 86.0 1e-14 seq136 86.0 1e-14 seq1141 82.4 1e-13 seq813 80.6 4e-13 seq249 73.4 6e-11 >seq158 Length=676796 Score = 174 bits (192), Expect = 3e-41 Identities = 197/258 (76%), Gaps = 16/258 (6%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 674566 TCAGTGTAGCGCGCATGCGGCCCAGAACATCCAAGGGCATCACAGACCTGTTATTGCCTC 674507 Query 76 AA--ACTTCCA-TTGGCTGGAAGCCAATAGTCCCTCTAA--GAA--GCCAGCCACCAACC 128 ||| | ||| | | |||| |||||||| | ||| | | ||||| | | Sbjct 674506 GCCGACTCCGGCTTGACGCGTCGCCAGCGGTCCCTCTGACAGAAAGGACGGCCACAGAGC 674447 Query 129 --ATAGTCGATGGGG------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || | | || | || ||| || |||||||||||||| |||||| | Sbjct 674446 GCAAAGAGGCTCGGCTCATCCCAATGTAG-AGAGCGAGGTCTCGTTCGTTCACGGAATCA 674388 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 674387 ACCAGACAGATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCGCGGAATCGTGA 674328 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| || ||||||| Sbjct 674327 AAGAGCTGTCGATCTGTC 674310 Score = 161 bits (178), Expect = 2e-37 Identities = 200/272 (74%), Gaps = 30/272 (11%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 663854 TCAGTGTAGCGCGCGTGCGGCCCGGAACATCCAAGGGCATCACAGACCTGTTATTGCCTC 663795 Query 76 AA--ACTTCCA-TTGGCTGGAAGCCAATAGTCCCTCTAAGAA----GCCAGCCACCAACC 128 ||| | ||| | | ||| |||||||||||| | | |||||| ||| Sbjct 663794 GCCGACTCCGGCTTGACGCGTCGCCGGCGGTCCCTCTAAGAGAAAGGACGGCCACCGACC 663735 Query 129 ATAGTCGA------TGG---------GGCT-------ATTTAGCAGGTTAAGGTCTCGTT 166 | | | ||| |||| || ||| || |||||||||| Sbjct 663734 AAAAGCTCCGCAATTGGAGCAAAATCGGCTCCTCCCAATGTAG-AGAGCGAGGTCTCGTT 663676 Query 167 CGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 |||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 663675 CGTTCACGGAATCAACCAGACAGATCGCTCCACCAACTAAGAACGGCCATGCACCACCAC 663616 Query 227 CCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| ||||||||| || ||||||| Sbjct 663615 CCGCGGAATCGTGAAAGAGCTGTCGATCTGTC 663584 >seq708 Length=204443 Score = 98.7 bits (108), Expect = 2e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 8237 TCAGTGTAGCGCGCGTGCGGCCCGGAACATCCAAGGGCATCACAGACCTGTTATTGCCT 8179 >seq1389 Length=43855 Score = 96.9 bits (106), Expect = 6e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 11811 TCAGTGTAGCGCGTGTGCGGTCCAGAACATCAAAGGGCATCACAGACCTGTTATTGCCTC 11752 Query 76 A 76 | Sbjct 11751 A 11751 >seq1265 Length=56461 Score = 96.9 bits (106), Expect = 6e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 4935 TCAGTGTAGCGCGTGTGCGGCCCGGAACATTTAAGGGCATCACAGACCTGTTATTGCCTC 4994 Query 76 A 76 | Sbjct 4995 A 4995 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||| Sbjct 3152 TCAGTGTAGCGCGTGTGCTGCCTGGAACATCTAAGGGCATCACAGCCCTGTTATTGC 3208 >seq1133 Length=75797 Score = 91.5 bits (100), Expect = 2e-16 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||| | |||||| || |||||||||||||||||||||||||||||||||||| Sbjct 43434 TCAGTGTAGCGTGTGTGCGGGCCGGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 43493 >seq641 Length=230097 Score = 91.5 bits (100), Expect = 2e-16 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||| Sbjct 100644 TCAGTGTAGCGCGTGTGTGGCCCGGAACATCTAAGGGCTTCACAGACCTGTTATTGCCTC 100585 >seq411 Length=362868 Score = 86.0 bits (94), Expect = 1e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||| ||| Sbjct 100369 TCAGTGTAGCGCGTGGGCGGCCCGGAATATCTAAGGGCATCACAGACCTGTTATTGTCTC 100310 >seq136 Length=742492 Score = 86.0 bits (94), Expect = 1e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||| |||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||| Sbjct 600782 TCAGCGTAGCGCGTGTGTGGCCCGGAATATCTAAGGGCATCACAGACCTGTTATTGCCTC 600841 >seq1141 Length=74593 Score = 82.4 bits (90), Expect = 1e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 || |||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||| Sbjct 18545 TCCGTGTAGCGCGTGTGCGGCCCTAAACATCTAGGGGCATCACAGACCTGTTACTGCCTC 18604 >seq813 Length=160490 Score = 80.6 bits (88), Expect = 4e-13 Identities = 54/60 (90%), Gaps = 4/60 (7%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| Sbjct 129942 TCAGTGTAGCGCGTGTGCGGCCCAGAAC----AAGGGCATCACAGACCTGTTATTACCTC 129887 >seq249 Length=509689 Score = 73.4 bits (80), Expect = 6e-11 Identities = 63/76 (83%), Gaps = 4/76 (5%) Strand=Plus/Plus Query 2 ACTCG--GTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 59 ||||| ||||| | ||||||||| ||| ||| |||| ||| |||||||||||||||| Sbjct 384820 ACTCGCTGTGGCGC--TCAGTGTAGTGCGTGTGTGGCCTGGAAGATCTAAGGGCATCACA 384877 Query 60 GACCTGTTATTGCCTC 75 ||||||||| ||| || Sbjct 384878 GACCTGTTAATGCTTC 384893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796781312301