Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq706 300 3e-79 seq610 300 3e-79 seq671 179 6e-43 seq109 176 8e-42 seq104 116 6e-24 seq744 102 1e-19 seq17 100 5e-19 seq362 95.1 2e-17 >seq706 Length=204824 Score = 300 bits (332), Expect = 3e-79 Identities = 218/252 (87%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 3180 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTC 3121 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||||||||||| | ||| ||| |||||| ||| ||||||||||||||||||| Sbjct 3120 GGTGGGTGAACAATCCAGCACTTGGCGACTTCTGCGTCGCAATGATAGGAAGAGCCGACA 3061 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 3060 TCGAAGGATCAAAAAGCAACGTCGCTACGAACGCTTGGCTGCCACAAGCCAGTTACCCCT 3001 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT----TCGAGGGACTAAAGGATCGATA 268 | |||||||| |||| ||||||| || || | | || | | |||||||||||| Sbjct 3000 GAGGTAACTTGTCTGACACCTCTTGCTCCACACTCGGGACGCCGTTCAAAAGGATCGATA 2941 Query 269 GGCCACACTTTC 280 |||| | ||||| Sbjct 2940 GGCCGCGCTTTC 2929 >seq610 Length=240994 Score = 300 bits (332), Expect = 3e-79 Identities = 218/252 (87%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 110268 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTC 110209 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||||||||||| | ||| ||| |||||| ||| ||||||||||||||||||| Sbjct 110208 GGTGGGTGAACAATCCAGCACTTGGCGACTTCTGCGTCGCAATGATAGGAAGAGCCGACA 110149 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 110148 TCGAAGGATCAAAAAGCAACGTCGCTACGAACGCTTGGCTGCCACAAGCCAGTTACCCCT 110089 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT----TCGAGGGACTAAAGGATCGATA 268 | |||||||| |||| ||||||| || || | | || | | |||||||||||| Sbjct 110088 GAGGTAACTTGTCTGACACCTCTTGCTCCACACTCGGGACGCCGTTCAAAAGGATCGATA 110029 Query 269 GGCCACACTTTC 280 |||| | ||||| Sbjct 110028 GGCCGCGCTTTC 110017 >seq671 Length=218750 Score = 179 bits (198), Expect = 6e-43 Identities = 131/152 (86%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||| || |||||||||||||||| | ||| || |||||| ||| ||||||||||||| Sbjct 24058 CCTTTTGGTGGGTGAACAATCCAGCACTTGGTGACTTCTGCGTCGCAATGATAGGAAGAG 23999 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 || | ||| ||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 23998 CCAAAATCAAAGGATCAAAAAGCAACGTCGTTACGAACGCTTGGCTGCCACAAGCCAGTT 23939 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 | ||||| |||||||| |||| ||||||| || Sbjct 23938 ACCCCTGAGGTAACTTGTCTGACACCTCTTGC 23907 Score = 172 bits (190), Expect = 9e-41 Identities = 130/152 (86%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||| || |||||||||||||||| | ||| || ||| | | || ||||||||||||| Sbjct 30868 CCTTTTGGTGGGTGAACAATCCAGCACTTGGTGACTTCAGGT-CGCAATGATAGGAAGAG 30810 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 || | ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 30809 CCAAAATCAAAGGATCAAAAAGCAACGTCGCTACGAACGCTTGGCTGCCACAAGCCAGTT 30750 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 | ||||| |||||||| |||| ||||||| || Sbjct 30749 ACCCCTGAGGTAACTTGTCTGACACCTCTTGC 30718 >seq109 Length=791015 Score = 176 bits (194), Expect = 8e-42 Identities = 126/145 (87%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 |||||||||||||||| | ||| || |||||| ||| ||||||||||||||| | || Sbjct 639779 GTGGGTGAACAATCCAGCACTTGGTGACTTCTGCGTCGCAATGATAGGAAGAGCCAAAAT 639720 Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| Sbjct 639719 CGAAGGATCAAAAAGCAACGTCGCTACGAATGCTTGGCTGCCACAAGCCAGTTACCCCTG 639660 Query 214 TGGTAACTTTTCTGGCACCTCTAGC 238 |||||||| |||| ||| ||| || Sbjct 639659 AGGTAACTTGTCTGACACATCTTGC 639635 >seq104 Length=805721 Score = 116 bits (128), Expect = 6e-24 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 |||||||||||||| |||||||||| |||||||||||||||||||| |||||| ||||| Sbjct 351122 GAAGGATCAAAAAGAAACGTCGCTACGAACGCTTGGCTGCCACAAGTCAGTTACCCCTGA 351063 Query 215 GGTAACTTTTCTGGCACCTCTAGC 238 |||||||| |||| ||||||| || Sbjct 351062 GGTAACTTGTCTGACACCTCTTGC 351039 >seq744 Length=187447 Score = 102 bits (112), Expect = 1e-19 Identities = 94/118 (80%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 22 GGGCGACGGTCATCAGTAGGGTAAAACT-AACCTGTCTCATGACGGTCTAAACCCAGCTC 80 |||| ||| |||||||| ||||||| |||| || || |||||| ||||||||| || Sbjct 11314 GGGCCACGCAGATCAGTAGCATAAAACTCAACCCCTCGCACGACGGTATAAACCCAGGTC 11255 Query 81 ACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138 ||||||| || |||||||||||||||| | ||| ||| |||||||||| ||||| Sbjct 11254 ACGTTCCTGGTTGGTGGGTGAACAATCCAGCACTTGGCGACTTCTGCTTCGCAATGAT 11197 >seq17 Length=1342916 Score = 100 bits (110), Expect = 5e-19 Identities = 87/107 (81%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACT-AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||| ||||||| |||| || || |||||| ||||||||| ||||||||| | Sbjct 1772 ATCAGTAGCATAAAACTTAACCCCTCGCACGACGGTTTAAACCCAGGTCACGTTCCTGGT 1713 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138 | |||||||||||||||| | ||| ||| |||||||||| ||||| Sbjct 1712 TGGTGGGTGAACAATCCAGCACTTGGCGACTTCTGCTTCGCAATGAT 1666 >seq362 Length=396315 Score = 95.1 bits (104), Expect = 2e-17 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 167589 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCT 167533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854379314976