Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq158 325 1e-86 seq609 302 1e-79 seq613 138 3e-30 >seq158 Length=676796 Score = 325 bits (360), Expect = 1e-86 Identities = 379/502 (75%), Gaps = 51/502 (10%) Strand=Plus/Minus Query 24 CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC-CGTGTCGGGATTGGGTAAT 82 |||| | |||| | || || || | ||||||||||||| | || |||||||||||| Sbjct 662795 CAAAGGGGCCCCGCCTCGTTAGTTCTCGTCACTACCTCCCTCCAGTGAGGATTGGGTAAT 662736 Query 83 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAAT 142 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 662735 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTCTCTCAGGCTCCCTCTCCGGAAT 662676 Query 143 CGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGGTAGGCCACTATCCTACCATCGAA 201 ||||||| ||||||||| |||||| ||| ||| |||| ||||||| | |||| || Sbjct 662675 CGAACCCCGATTCCCCGTCACCCGT-GATCACCGCGGTAAGCCACTACCTTACCGTCCGC 662617 Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATC--GCCGGCTCAAG-GCCATGC-GATTCG 257 ||||||||||||||| ||||||||||| | || || || |||| | | | ||| || Sbjct 662616 AGTTGATAGGGCAGAGATTTGAATGAAGCGTCCGTCCCGC-CAAGTGGGAGACGGATCCG 662558 Query 258 TTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATA 317 || ||||| | || || |||| | | |||| | | ||||||||||| Sbjct 662557 TTCAGTTACTCGGAGTC--------GCCC------GACTCGGTTCTCTCTCTAATAAATA 662512 Query 318 CACC-----CCTT---CCGAAGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368 | | |||| ||| | ||| | | | ||||||||||||||||||||||| | Sbjct 662511 CGTCTCCGTCCTTGTGCCG--GACGGAGACTCCTTGCATGTATTAGCTCTAGAATTACTA 662454 Query 369 CGGTTATCCATGTAG------TAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 ||||||||||||||| | | | | |||| ||||| || |||||| |||||||| Sbjct 662453 CGGTTATCCATGTAGTGCCGTTGGGCTCGTCTCAAGTAAACCATCACTGATGTAATGAGC 662394 Query 423 CATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAG 482 | ||||||||||||| ||| |||| |||||||||||||||||||| || Sbjct 662393 CTTTCGCAGTTTCAC----TAG--------CACTTGCACATGCATGGCTTAATCTTTTAG 662346 Query 483 ACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| Sbjct 662345 ACAAGCATATGACTACTGGCAG 662324 Score = 241 bits (266), Expect = 4e-61 Identities = 340/475 (72%), Gaps = 66/475 (14%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCC-CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 || || | ||||||||||||| || || ||||||||||||||||||||||||| Sbjct 673503 TAGTTCTCGTCACTACCTCCCTCGAGTGAGGATTGGGTAATTTGCGCGCCTGCT------ 673450 Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 |||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 673449 ------------AGCCGTCTCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCCCCGTC 673402 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 |||||| | ||| | || ||||||| | |||| || ||||||||||||||| |||| Sbjct 673401 ACCCGTGGTCACCGCGATAAGCCACTACCTTACCGTCTGCAGTTGATAGGGCAGAGATTT 673342 Query 222 GAATGAACCATCGCCGGCTCA--AG-GCCATGC-GATTCGTTAAGTTATTATGAATCACC 277 ||||||| ||| ||| | || || | | | ||| |||| ||||| | || || Sbjct 673341 GAATGAAGCAT--CCGTCCCACCAGTGGGAGACGGATCCGTTCAGTTACTCGGAGTC--- 673287 Query 278 AAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACA-CCCCTTCC-----GAAG 331 |||| | | || || | ||||||||||||| | || ||| | | Sbjct 673286 -----GCCC------GACTCGG--TTCTCTCTAATAAATACATCTCCGTCCCGCAAAAGG 673240 Query 332 TCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG------T 384 ||| | | | ||||||||||||||||||||||| |||||||||||||||| | Sbjct 673239 ACGGAGACTCCTTGCATGTATTAGCTCTAGAATTACTACGGTTATCCATGTAGTGCCGTT 673180 Query 385 AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG 444 | | | |||| ||||| || |||||| |||| |||| |||||||||| || ||| Sbjct 673179 GGGCTCGTCTCAAGTAAACCATCACTGATGTAATAAGCCTTTCGCAGTTTTAC----TAG 673124 Query 445 ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 |||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 673123 --------CACTTGCACATGCATGGCTTAATCTTTTAGACAAGCATATGACTACT 673077 >seq609 Length=241026 Score = 302 bits (334), Expect = 1e-79 Identities = 367/494 (74%), Gaps = 41/494 (8%) Strand=Plus/Minus Query 24 CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC-CGTGTCGGGATTGGGTAAT 82 |||| | |||| | || || || | ||||||||||||| | || |||||||||||| Sbjct 157113 CAAAGGGGCCCCGCCTCGTTAGTTCTCGTCACTACCTCCCTCCAGTGAGGATTGGGTAAT 157054 Query 83 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAAT 142 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 157053 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTCTCTCAGGCTCCCTCTCCGGAAT 156994 Query 143 CGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGGTAGGCCACTATCCTACCATCGAA 201 ||||||| ||||||||| |||||| ||| ||| |||| ||||||| | |||| || Sbjct 156993 CGAACCCCGATTCCCCGTCACCCGT-GATCACCGCGGTAAGCCACTACCTTACCGTCCGC 156935 Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATC--GCCGGCTCAAG-GCCATGC-GATTCG 257 ||||||||||||||| ||||||||||| | || || || |||| | | | ||| || Sbjct 156934 AGTTGATAGGGCAGAGATTTGAATGAAGCGTCCGTCCCGC-CAAGTGGGAGACGGATCCG 156876 Query 258 TTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATA 317 || ||||| | || || |||| | | |||| | | ||||||||||| Sbjct 156875 TTCAGTTACTCGGAGTC--------GCCC------GACTCGGTTCTCTCTCTAATAAATA 156830 Query 318 C-ACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATC 376 | | || || | | | | | | |||||||||||||||| |||| ||||||||| Sbjct 156829 CGTCTCCATCGGCTACAGAGACTCGTTGTATGTATTAGCTCTAGACTTACTACGGTTATC 156770 Query 377 CATGTAG------TAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 ||||||| | | | | |||| ||||| || |||||| ||||||||| |||||| Sbjct 156769 CATGTAGTGCCGTTGGGCTCGTCTCAAGTAAACCATCACTGATGTAATGAGCCTTTCGCA 156710 Query 431 GTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 ||||||| | |||| ||||||||||| |||||| | ||||||| || Sbjct 156709 ATTTCACTAT------------CACTTGTACATGCATGGCATAATCTGTTAGACAAGTAT 156662 Query 491 ATGACTACTGGCAG 504 |||||||||||||| Sbjct 156661 ATGACTACTGGCAG 156648 >seq613 Length=239539 Score = 138 bits (152), Expect = 3e-30 Identities = 130/167 (78%), Gaps = 18/167 (11%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG------TAAGGTACTATCAA 397 ||||||||||||||||||||||| |||||||||||||||| | | | | |||| Sbjct 81703 GCATGTATTAGCTCTAGAATTACTACGGTTATCCATGTAGTGCCGTTGGGCTCGTCTCAA 81644 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 ||||| || |||||| ||||||||| ||||||||||||| ||| |||| Sbjct 81643 GTAAACCATCACTGATGTAATGAGCCTTTCGCAGTTTCAC----TAG--------CACTT 81596 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| |||||||||||||| ||||||||||||| ||||||||| Sbjct 81595 GCACATGGATGGCTTAATCTTTTTGACAAGCATATGATTACTGGCAG 81549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510363433216