Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq16091 89.7 3e-16 seq1222 82.4 4e-14 seq1225 73.4 2e-11 >seq16091 Length=50250 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||| |||||| | ||||||||| | || | | | ||||| | | Sbjct 18125 GAACCCAAAATCTTGGATTTCCCATAAGGTGCCAAACGGGGTCATACAATAACGCCCGCT 18066 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGG-TATCTGATCGTCTTC 115 ||||||||| |||||| ||||| ||||| |||| ||||| ||||||||||||||| Sbjct 18065 GATCCCTAGACGGCATCGTTTATGGTTAGAACTAGGACGGGTATCTGATCGTCTTC 18010 >seq1222 Length=899366 Score = 82.4 bits (90), Expect = 4e-14 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 5 CCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATC 64 ||||| ||| | |||| | ||||||||| | | |||| | ||||| | | |||| Sbjct 145291 CCAAAATCTTGGGTTTCCCATAAGGTGCCAACGGGGTCATACA-ATAACGCCCGCTGATC 145349 Query 65 CC-TAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| |||||| ||||| ||||| |||| |||||||||||||||||||||| Sbjct 145350 CCCTAGACGGCATCGTTTATGGTTAGAACTAGGACGGTATCTGATCGTCTTCGA 145403 >seq1225 Length=28465 Score = 73.4 bits (80), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 6/122 (5%) Strand=Plus/Minus Query 1 GAACCCAAAGA-CTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGC- 58 ||||||||| | ||| | |||| | | ||||||| | || || | | ||||| | | Sbjct 3617 GAACCCAAAAATCTTGGGTTTCCCATTAGGTGCCAA-CGGGTTGATACAATAACGACCCG 3559 Query 59 -CCGATCCCTAGTCGGC--ATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 | ||||||||| ||| || ||||| ||||| |||| |||||||||||||||||||| Sbjct 3558 GCTGATCCCTAGGCGGGCGATCGTTTATGGTTAGAACTAGGACGGTATCTGATCGTCTTC 3499 Query 116 GA 117 || Sbjct 3498 GA 3497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278357994660