Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq16091 125 1e-26 seq1225 120 6e-25 seq1222 96.9 6e-18 >seq16091 Length=50250 Score = 125 bits (138), Expect = 1e-26 Identities = 201/268 (75%), Gaps = 28/268 (10%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTC-AAAGCAGGCCTTT--GCTCGAATACAT-TAGC 128 ||| ||||||||||| ||||||||||| |||||| || || ||| | |||||| |||| Sbjct 17733 TTTAACTTTGAAAAATTTAGAGTGTTCTAAAGCAAGCATTCTAGCTTGTATACATGTAGC 17792 Query 129 -AT--GGAAT-AATAG--AATAGG-ACGTGC--GGTTC-----TATTTTGTTGGTTT--C 172 || ||||| ||| | || ||| || | ||| | | ||| |||||||| | Sbjct 17793 TATTGGGAATTAATGGGTAACAGGTACCTTTTGGGTACCCCGTTTTTTGGTTGGTTTTCC 17852 Query 173 TAGG-ACCGCCGT-AATGATTAA--TAGGG-ATAGTCGGGGGTGTCAGTATTCAATTGTC 227 ||| ||| ||| ||||||| | ||||| | | ||||| | ||||| ||||| Sbjct 17853 AAGGTACCAACGTTAATGATTTAAGTAGGGGACAAATGGGGGCATTCGTATTTCGTTGTC 17912 Query 228 AGAGGTGAAATTCTTGGATTTATTGAAGAC-TAACTAC-TGCGAAAGCGTTCACCAAGGA 285 |||||||||||||||||||||| ||||| |||| || ||||||||| || ||||| | Sbjct 17913 AGAGGTGAAATTCTTGGATTTACGAAAGACGTAACAACTTGCGAAAGCATTTGCCAAGAA 17972 Query 286 TGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||||||||||||| ||||||||||| Sbjct 17973 TGTTTTCATTAATCA-AGAACGAAAGTT 17999 >seq1225 Length=28465 Score = 120 bits (132), Expect = 6e-25 Identities = 164/218 (75%), Gaps = 17/218 (8%) Strand=Plus/Plus Query 113 GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTC 172 ||| | |||||| |||| |||||| | | |||| | ||| | ||||||||||||| Sbjct 3283 GCTTGTATACATGAGCA-GGAATAT--GGACAGGAACTTTGGTCCCGTTTTGTTGGTTTC 3339 Query 173 TAGGACCG---CCGT--AAT-GATTAATAG----GGATAG-TCGGGGGTGTCAGTATTCA 221 |||||| | || ||| |||| | || ||| | | ||||| || ||||| Sbjct 3340 CAGGACCAAACCGGTTAAATCGATTTAAAGTAGGGGACAAATGGGGGGCATC-GTATTTC 3398 Query 222 ATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCA 281 ||||||||||||||||||||||||||| ||||| ||| ||||||||||| || ||| Sbjct 3399 GTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCATTTGCCA 3458 Query 282 AGGA-TGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || | ||||||||||||||| ||||||||||||| || Sbjct 3459 AGAATTGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 3495 >seq1222 Length=899366 Score = 96.9 bits (106), Expect = 6e-18 Identities = 164/219 (75%), Gaps = 19/219 (9%) Strand=Plus/Minus Query 109 CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG 168 ||| ||| | ||| || |||||||| |||| ||| ||| || || | ||||||||| Sbjct 145613 CTTAGCTTGTATA-ATGAGCATGGA-TAATGGAACAGGCTTTG--GTCCCGTTTTGTTGG 145558 Query 169 TTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGT-C 227 |||| || || |||||||||||| ||| | | | |||| || ||||| |||| | Sbjct 145557 TTTCCAG-ACA--CGTAATGATTAAGAGG-ACAATGGGGGCATTC-GTATTTCGTTGTTC 145503 Query 228 AGAGGTGAAATT-CTTGGATTTATTGAA-GACTAACTACTGCGAAAGC---GTTCACCAA 282 |||||||||||| ||||||||| ||| ||| ||| ||||||||||| || | || Sbjct 145502 AGAGGTGAAATTTCTTGGATTTTACGAAAGACGAACAACTGCGAAAGCAATTTTGCCTAA 145443 Query 283 G-GATG-TTTTCA-TTAATCAGTGAACGAAAGTTAGGGG 318 | ||| |||||| ||||||| ||||||||||||| || Sbjct 145442 GAAATGTTTTTCATTTAATCA-AGAACGAAAGTTAGAGG 145405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915052707712