Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq15270 178 5e-42 seq6644 149 3e-33 seq6050 116 2e-23 seq14356 102 3e-19 seq16083 89.7 2e-15 seq9809 84.2 9e-14 seq11007 80.6 1e-12 seq11425 78.8 4e-12 seq1640 77.0 1e-11 seq10911 75.2 5e-11 seq9882 75.2 5e-11 >seq15270 Length=219883 Score = 178 bits (196), Expect = 5e-42 Identities = 139/166 (84%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||| ||| ||||||||| ||||||||| |||||| | | |||||| Sbjct 21655 TTCCATGAGTCGGGTTGCTTGAGAATGCAGCCCTAAATGGGTGGTAAACTCCACCTAAAG 21714 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| ||||||||||| | ||||||| |||| |||| |||||||| ||| Sbjct 21715 CTAAATATTGGCACGAGACCGATAGTGAACAAGTACCGTGAGGGAAAAATGAAAAGAACT 21774 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| |||||||||||||||| |||||||| ||| |||||||| || Sbjct 21775 TTGAAAAGAGAGTTAAAAAGTACGTGAAACCGTTAAAAGGGAAACG 21820 >seq6644 Length=323484 Score = 149 bits (164), Expect = 3e-33 Identities = 136/168 (81%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||| ||| ||||||||| ||||||||| |||||| | | |||||| Sbjct 149373 TTCCATGAGTCGGGTTGCTTGAGAATGCAGCCCTAAATGGGTGGTAAACTCCACCTAAAG 149314 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| ||||||||||| | ||||||| |||| |||| |||||||| ||| Sbjct 149313 CTAAATATTGGCACGAGACCGATAGTGAACAAGTACCGTGAGGGAAA-ATGAAAAGAACT 149255 Query 154 TTGGAAAGAGAGTTAAAAAGCACGT-GAAA-TTGTTGAAAGGGAAGCG 199 ||| ||||||| | ||||| |||| |||| ||| |||||||| || Sbjct 149254 TTGAAAAGAGAAGTTAAAAGTACGTAGAAACCGGTTAAAAGGGAAACG 149207 >seq6050 Length=528721 Score = 116 bits (128), Expect = 2e-23 Identities = 117/143 (82%), Gaps = 12/143 (8%) Strand=Plus/Minus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 || ||||||| | | |||||| ||||| ||||||||||||||||||||| |||| | Sbjct 92483 TTCGAGTAAGCGTA---CTGTTGT-ACCCGTAAGATGGTGAACTATGCCTGAGCAGGGCG 92428 Query 606 --AAGCCAG-AGGAAACT-CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 || | || |||||||| ||||| |||||||| |||| ||||| |||| ||||||||| Sbjct 92427 GAAACCGAGTAGGAAACTCCTGGT-GAGGCTCGTAGCGATTCTGACGTG--AATCGATCG 92371 Query 662 TCAAATTTGGG-TATAGGGGCGA 683 ||||| ||||| ||||||||||| Sbjct 92370 TCAAACTTGGGTTATAGGGGCGA 92348 >seq14356 Length=68290 Score = 102 bits (112), Expect = 3e-19 Identities = 112/142 (79%), Gaps = 8/142 (6%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCA-GCTCTAAATGGGAGGTAAATTTCTTCT--A 90 ||| | |||||| || ||| ||||||| || ||||||||| |||||| | | | | Sbjct 52460 TTCCATGAGTCGG--TGCTTGAGAATGCAAGCCCTAAATGGGTGGTAAACTCCGACCTAA 52517 Query 91 AAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAG 149 ||||||||||||||| ||||||||||| | ||||||| || || |||| ||| |||| Sbjct 52518 AAGCTAAATATTGGCACGAGACCGATAGTGAACAAGTACCGTAGAGGGAAA-ATG-AAAG 52575 Query 150 CACTTTGGAAAGAGAGTTAAAA 171 ||||| ||||||||||||||| Sbjct 52576 AACTTTAGAAAGAGAGTTAAAA 52597 >seq16083 Length=49543 Score = 89.7 bits (98), Expect = 2e-15 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| ||||||||| ||||||||| |||||| | | |||||||||||| Sbjct 12208 GAGTCGGGTTGCTTGAGAATGCAGCCCTAAATGGGTGGTAAACTCCACCTAAAGCTAAAT 12149 Query 100 ATT-GGCCAGAGACCGATAG-CGCACAAGTA 128 ||| ||| ||||||||||| | ||||||| Sbjct 12148 ATTAGGCACGAGACCGATAGTAGAACAAGTA 12118 >seq9809 Length=371691 Score = 84.2 bits (92), Expect = 9e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 308959 AAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAG 308906 >seq11007 Length=278484 Score = 80.6 bits (88), Expect = 1e-12 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct 50630 GAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTC 50579 >seq11425 Length=918420 Score = 78.8 bits (86), Expect = 4e-12 Identities = 89/111 (80%), Gaps = 10/111 (9%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGT-TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 || ||||| |||| | | || | | |||||||||||||||||||||| ||| | ||||| Sbjct 204767 TTCGAGTACGAGCGTTACCGTGTTGTACCCGAAAGATGGTGAACTATG-CTG-AGAGGGT 204824 Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG-CGGTTCTGGCGTGCAAA 654 |||||||| |||| ||||||||||||| || || ||||| | |||||| Sbjct 204825 GAAGCCAG----AACT-TGGTGGAGGCTCGTAGTCGATTCTGAC-TGCAAA 204869 >seq1640 Length=23738 Score = 77.0 bits (84), Expect = 1e-11 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 3440 TGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGG 3391 >seq10911 Length=282568 Score = 75.2 bits (82), Expect = 5e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653 |||||||||||||||||||||||||||||| |||| ||||| ||||||| Sbjct 240305 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAA 240257 >seq9882 Length=660319 Score = 75.2 bits (82), Expect = 5e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 || ||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 303244 GGAACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAA 303294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079654783700