Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq16084 98.7 6e-19 seq4 73.4 2e-11 seq13185 71.6 8e-11 seq4880 71.6 8e-11 >seq16084 Length=10182 Score = 98.7 bits (108), Expect = 6e-19 Identities = 81/92 (88%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| ||||| | |||||||| ||||| || ||||||||| ||||||||||| |||| Sbjct 3111 GCCAAT-CCGAAGGC-CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGT 3056 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||||||||| |||||| |||| Sbjct 3055 ACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 3025 >seq4 Length=1652642 Score = 73.4 bits (80), Expect = 2e-11 Identities = 48/52 (92%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 60 ATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAA 111 ||| || ||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 440774 ATTACAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAA 440824 >seq13185 Length=617992 Score = 71.6 bits (78), Expect = 8e-11 Identities = 77/95 (81%), Gaps = 8/95 (8%) Strand=Plus/Minus Query 34 CCAATTCCGAAAGTTC---TCACT-AAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGG 89 ||||| ||| ||| | ||||| || ||| |||| ||||||||| || |||||||| | Sbjct 226014 CCAATACCGTAAGGACCGTTCACTTAAACCAATTCAATCGGTAGTA-GC-ACGGGCGGTG 225957 Query 90 TGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||| |||||| || |||||| |||| Sbjct 225956 TGTACAAAGGGCA-GGACGTGAT-CAACGCGAGCT 225924 >seq4880 Length=207600 Score = 71.6 bits (78), Expect = 8e-11 Identities = 78/95 (82%), Gaps = 9/95 (9%) Strand=Plus/Minus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATT-CGGTAGTAAGCGACGGGCGGGGTG 91 ||| || ||||| | |||||||| ||| |||| | |||||||| ||||||| ||||| Sbjct 111273 GCCGATACCGAAGG--CTCACTAAACCAATTCAATACGGTAGTA-GCGACGGC--GGGTG 111219 Query 92 TACAAAGGG-CAGGGAC-GTAATACAACGCAAGCT 124 ||||||||| ||||||| ||||| |||||| |||| Sbjct 111218 TACAAAGGGACAGGGACGGTAAT-CAACGCGAGCT 111185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300754614920