Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2100 201 2e-49 seq885 201 2e-49 seq695 199 6e-49 >seq2100 Length=41576 Score = 201 bits (222), Expect = 2e-49 Identities = 205/258 (79%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 2606 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 2549 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 2548 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGATTCAACGGGTT 2489 Query 120 ACCCGGACCTGTCGG-CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | ||| |||| ||| || | || | || ||| | | |||||||||||||||||| Sbjct 2488 TCCCAGCCCTTTCGGGCCAGGGGGGTATCCACGCTGATTCCTTCAGTGTAGCGCGCGTGC 2429 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 2428 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 2371 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 2370 AGCCACTCGTCCCTCTAA 2353 Score = 201 bits (222), Expect = 2e-49 Identities = 205/258 (79%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 18690 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 18633 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 18632 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGATTCAACGGGTT 18573 Query 120 ACCCGGACCTGTCGG-CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | ||| |||| ||| || | || | || ||| | | |||||||||||||||||| Sbjct 18572 TCCCAGCCCTTTCGGGCCAGGGGGGTATCCACGCTGATTCCTTCAGTGTAGCGCGCGTGC 18513 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 18512 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 18455 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 18454 AGCCACTCGTCCCTCTAA 18437 Score = 201 bits (222), Expect = 2e-49 Identities = 205/258 (79%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 29311 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 29254 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 29253 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGATTCAACGGGTT 29194 Query 120 ACCCGGACCTGTCGG-CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | ||| |||| ||| || | || | || ||| | | |||||||||||||||||| Sbjct 29193 TCCCAGCCCTTTCGGGCCAGGGGGGTATCCACGCTGATTCCTTCAGTGTAGCGCGCGTGC 29134 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 29133 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 29076 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 29075 AGCCACTCGTCCCTCTAA 29058 Score = 196 bits (216), Expect = 7e-48 Identities = 204/259 (79%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 22025 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 21968 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA--T 118 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | | Sbjct 21967 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGATTCAACGGGTT 21908 Query 119 TACCCGGACCTGTCGG-CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 | || | ||| |||| ||| || | || | || ||| | | ||||||||||||||||| Sbjct 21907 TCCCAGCCCCTTTCGGGCCAGGGGGGTATCCACGCTGATTCCTTCAGTGTAGCGCGCGTG 21848 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 |||||| | |||||||||||||||||||||||||||||| ||||| || |||| |||| Sbjct 21847 CGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAA 21790 Query 238 AAGGCCATC-TCCCTCGAA 255 ||| | || |||||| || Sbjct 21789 AAGCCACTCGTCCCTCTAA 21771 >seq885 Length=324208 Score = 201 bits (222), Expect = 2e-49 Identities = 205/258 (79%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 24562 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 24619 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 24620 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGATTCAACGGGTT 24679 Query 120 ACCCGGACCTGTCGG-CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | ||| |||| ||| || | || | || ||| | | |||||||||||||||||| Sbjct 24680 TCCCAGCCCTTTCGGGCCAGGGGGGTATCCACGCTGATTCCTTCAGTGTAGCGCGCGTGC 24739 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 24740 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 24797 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 24798 AGCCACTCGTCCCTCTAA 24815 >seq695 Length=442779 Score = 199 bits (220), Expect = 6e-49 Identities = 204/257 (79%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 32222 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 32279 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 32280 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGATTCAACGGGTT 32339 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| | |||| | ||| | || | || ||| | | ||||||||||||||||||| Sbjct 32340 TCCCAGACTT-TCGGGCCAGGGGGTATCCACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 32398 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| | |||||||||||||||||||||||||||||| ||||| || |||| |||||| Sbjct 32399 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAA 32456 Query 240 GGCCATC-TCCCTCGAA 255 | | || |||||| || Sbjct 32457 GCCACTCGTCCCTCTAA 32473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751968441380