Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2100 212 1e-52 seq695 212 1e-52 seq885 208 1e-51 >seq2100 Length=41576 Score = 212 bits (234), Expect = 1e-52 Identities = 218/282 (77%), Gaps = 5/282 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| ||| | || ||||| ||| | | |||||||||||||||||||||||||| Sbjct 1678 TGCTCTTCGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTGTTC 1737 Query 100 AAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || ||||| |||||||||||| ||||||||| | ||||| Sbjct 1738 AAAGCAGGCCTCGGTAGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTT 1796 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | ||||||||||| ||||| | |||||| | || Sbjct 1797 CTATTTTGTTGGTTTTCGGAACGGAGGTAATGATTAACAGGGACAAACGGGGGCATTCGT 1856 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || ||||||||||||||||||| ||||| | ||||||||||||| || Sbjct 1857 ATTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAGCTACTGCGAAAGCATT 1916 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| |||||||||||| ||| |||||||||| || || Sbjct 1917 TGTCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 1957 Score = 212 bits (234), Expect = 1e-52 Identities = 218/282 (77%), Gaps = 5/282 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| ||| | || ||||| ||| | | |||||||||||||||||||||||||| Sbjct 17762 TGCTCTTCGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTGTTC 17821 Query 100 AAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || ||||| |||||||||||| ||||||||| | ||||| Sbjct 17822 AAAGCAGGCCTCGGTAGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTT 17880 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | ||||||||||| ||||| | |||||| | || Sbjct 17881 CTATTTTGTTGGTTTTCGGAACGGAGGTAATGATTAACAGGGACAAACGGGGGCATTCGT 17940 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || ||||||||||||||||||| ||||| | ||||||||||||| || Sbjct 17941 ATTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAGCTACTGCGAAAGCATT 18000 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| |||||||||||| ||| |||||||||| || || Sbjct 18001 TGTCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 18041 Score = 212 bits (234), Expect = 1e-52 Identities = 218/282 (77%), Gaps = 5/282 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| ||| | || ||||| ||| | | |||||||||||||||||||||||||| Sbjct 21096 TGCTCTTCGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTGTTC 21155 Query 100 AAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || ||||| |||||||||||| ||||||||| | ||||| Sbjct 21156 AAAGCAGGCCTCGGTAGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTT 21214 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | ||||||||||| ||||| | |||||| | || Sbjct 21215 CTATTTTGTTGGTTTTCGGAACGGAGGTAATGATTAACAGGGACAAACGGGGGCATTCGT 21274 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || ||||||||||||||||||| ||||| | ||||||||||||| || Sbjct 21275 ATTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAGCTACTGCGAAAGCATT 21334 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| |||||||||||| ||| |||||||||| || || Sbjct 21335 TGTCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 21375 Score = 212 bits (234), Expect = 1e-52 Identities = 218/282 (77%), Gaps = 5/282 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| ||| | || ||||| ||| | | |||||||||||||||||||||||||| Sbjct 28383 TGCTCTTCGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTGTTC 28442 Query 100 AAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || ||||| |||||||||||| ||||||||| | ||||| Sbjct 28443 AAAGCAGGCCTCGGTAGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTT 28501 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | ||||||||||| ||||| | |||||| | || Sbjct 28502 CTATTTTGTTGGTTTTCGGAACGGAGGTAATGATTAACAGGGACAAACGGGGGCATTCGT 28561 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || ||||||||||||||||||| ||||| | ||||||||||||| || Sbjct 28562 ATTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAGCTACTGCGAAAGCATT 28621 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| |||||||||||| ||| |||||||||| || || Sbjct 28622 TGTCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 28662 >seq695 Length=442779 Score = 212 bits (234), Expect = 1e-52 Identities = 218/282 (77%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| ||| | || ||||| ||| | | |||||||||||||||||||||||||| Sbjct 33148 TGCTCTTCGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTGTTC 33089 Query 100 AAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || ||||| |||||||||||| ||||||||| | ||||| Sbjct 33088 AAAGCAGGCCTCGGTAGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTT 33030 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | ||||||||||| ||||| | |||||| | || Sbjct 33029 CTATTTTGTTGGTTTTCGGAACGGAGGTAATGATTAACAGGGACAAACGGGGGCATTCGT 32970 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || ||||||||||||||||||| ||||| | ||||||||||||| || Sbjct 32969 ATTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAGCTACTGCGAAAGCATT 32910 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| |||||||||||| ||| |||||||||| || || Sbjct 32909 TGTCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 32869 >seq885 Length=324208 Score = 208 bits (230), Expect = 1e-51 Identities = 220/284 (77%), Gaps = 7/284 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| ||| | || ||||| ||| | | |||||||||||||||||||||||||| Sbjct 25492 TGCTCTTCGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTGTTC 25433 Query 100 AAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || ||||| |||||||||||| ||||||||| | ||||| Sbjct 25432 AAAGCAGGCCTCGGTAGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTT 25374 Query 157 CTATTTTGTTGGTTTCTAGG-ACCGCCGTAATGA-TTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||| | || || | ||||||| |||| ||||| | |||||| | Sbjct 25373 CTATTTTGTTGGTTTTTCGGAACGGAGGTAATGATTTAACAGGGACAAACGGGGGCATTC 25314 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || ||||||||||||||||||| ||||| | ||||||||||||| Sbjct 25313 GTATTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAGCTACTGCGAAAGCA 25254 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||| |||||||||||| ||| |||||||||| || || Sbjct 25253 TTTGTCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 25211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915160353536