Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2100 161 4e-37 seq885 161 4e-37 seq695 161 4e-37 seq623 109 2e-21 >seq2100 Length=41576 Score = 161 bits (178), Expect = 4e-37 Identities = 223/311 (72%), Gaps = 32/311 (10%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTC- 462 || ||||||||| |||||||||||||||||||||||| |||||| ||||| ||| Sbjct 4870 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTCATTGGGCTGTAC 4929 Query 463 -AAACCCGTGCGCGTAATGAAAGTGAA--------CGG-------AGGTGGGAAC----- 501 |||||| ||| | |||||| || ||| |||||||| | Sbjct 4930 GAAACCCAAAGGCGCAGTGAAAGCGAGGGTCGCTCCGGGCGATCCAGGTGGGATCTCCGC 4989 Query 502 ----CCGTGAGGGT---GCACCATCGACCGATCCTGATGTCTTCGGA--TGGATTTGAGT 552 ||| | ||| |||||| || || ||| | | |||| ||| ||| Sbjct 4990 CCGTCCGCGGGGGGAGCGCACCACCGGCCCGTCCCGTCTGCGTCGGCAGTGGGGCGGAGC 5049 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 ||||| | | ||||||||||||||||||||||||||||||| || |||||||| Sbjct 5050 TAGAGCGTGCACGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGAACGAAGCCAG 5109 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||||||||||||| | || |||| ||||| |||||||||||||||||||| ||||| Sbjct 5110 AGGAAACTCTGGTGGAAGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGG 5169 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 5170 TATAGGGGCGA 5180 Score = 161 bits (178), Expect = 4e-37 Identities = 223/311 (72%), Gaps = 32/311 (10%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTC- 462 || ||||||||| |||||||||||||||||||||||| |||||| ||||| ||| Sbjct 24279 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTCATTGGGCTGTAC 24338 Query 463 -AAACCCGTGCGCGTAATGAAAGTGAA--------CGG-------AGGTGGGAAC----- 501 |||||| ||| | |||||| || ||| |||||||| | Sbjct 24339 GAAACCCAAAGGCGCAGTGAAAGCGAGGGTCGCTCCGGGCGATCCAGGTGGGATCTCCGC 24398 Query 502 ----CCGTGAGGGT---GCACCATCGACCGATCCTGATGTCTTCGGA--TGGATTTGAGT 552 ||| | ||| |||||| || || ||| | | |||| ||| ||| Sbjct 24399 CCGTCCGCGGGGGGAGCGCACCACCGGCCCGTCCCGTCTGCGTCGGCAGTGGGGCGGAGC 24458 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 ||||| | | ||||||||||||||||||||||||||||||| || |||||||| Sbjct 24459 TAGAGCGTGCACGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGAACGAAGCCAG 24518 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||||||||||||| | || |||| ||||| |||||||||||||||||||| ||||| Sbjct 24519 AGGAAACTCTGGTGGAAGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGG 24578 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 24579 TATAGGGGCGA 24589 Score = 161 bits (178), Expect = 4e-37 Identities = 223/311 (72%), Gaps = 32/311 (10%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTC- 462 || ||||||||| |||||||||||||||||||||||| |||||| ||||| ||| Sbjct 31569 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTCATTGGGCTGTAC 31628 Query 463 -AAACCCGTGCGCGTAATGAAAGTGAA--------CGG-------AGGTGGGAAC----- 501 |||||| ||| | |||||| || ||| |||||||| | Sbjct 31629 GAAACCCAAAGGCGCAGTGAAAGCGAGGGTCGCTCCGGGCGATCCAGGTGGGATCTCCGC 31688 Query 502 ----CCGTGAGGGT---GCACCATCGACCGATCCTGATGTCTTCGGA--TGGATTTGAGT 552 ||| | ||| |||||| || || ||| | | |||| ||| ||| Sbjct 31689 CCGTCCGCGGGGGGAGCGCACCACCGGCCCGTCCCGTCTGCGTCGGCAGTGGGGCGGAGC 31748 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 ||||| | | ||||||||||||||||||||||||||||||| || |||||||| Sbjct 31749 TAGAGCGTGCACGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGAACGAAGCCAG 31808 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||||||||||||| | || |||| ||||| |||||||||||||||||||| ||||| Sbjct 31809 AGGAAACTCTGGTGGAAGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGG 31868 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 31869 TATAGGGGCGA 31879 Score = 145 bits (160), Expect = 3e-32 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 4318 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 4377 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||| ||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 4378 ACTGGCACGAGTCCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 4437 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 4438 AGAGAGTTCAAGAGTACGTGAAA 4460 Score = 145 bits (160), Expect = 3e-32 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 23727 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 23786 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||| ||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 23787 ACTGGCACGAGTCCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 23846 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 23847 AGAGAGTTCAAGAGTACGTGAAA 23869 Score = 145 bits (160), Expect = 3e-32 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 31017 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 31076 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||| ||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 31077 ACTGGCACGAGTCCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 31136 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 31137 AGAGAGTTCAAGAGTACGTGAAA 31159 >seq885 Length=324208 Score = 161 bits (178), Expect = 4e-37 Identities = 223/311 (72%), Gaps = 32/311 (10%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTC- 462 || ||||||||| |||||||||||||||||||||||| |||||| ||||| ||| Sbjct 22311 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTCATTGGGCTGTAC 22252 Query 463 -AAACCCGTGCGCGTAATGAAAGTGAA--------CGG-------AGGTGGGAAC----- 501 |||||| ||| | |||||| || ||| |||||||| | Sbjct 22251 GAAACCCAAAGGCGCAGTGAAAGCGAGGGTCGCTCCGGGCGATCCAGGTGGGATCTCCGC 22192 Query 502 ----CCGTGAGGGT---GCACCATCGACCGATCCTGATGTCTTCGGA--TGGATTTGAGT 552 ||| | ||| |||||| || || ||| | | |||| ||| ||| Sbjct 22191 CCGTCCGCGGGGGGAGCGCACCACCGGCCCGTCCCGTCTGCGTCGGCAGTGGGGCGGAGC 22132 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 ||||| | | ||||||||||||||||||||||||||||||| || |||||||| Sbjct 22131 TAGAGCGTGCACGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGAACGAAGCCAG 22072 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||||||||||||| | || |||| ||||| |||||||||||||||||||| ||||| Sbjct 22071 AGGAAACTCTGGTGGAAGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGG 22012 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 22011 TATAGGGGCGA 22001 Score = 145 bits (160), Expect = 3e-32 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 22863 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 22804 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||| ||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 22803 ACTGGCACGAGTCCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 22744 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 22743 AGAGAGTTCAAGAGTACGTGAAA 22721 >seq695 Length=442779 Score = 161 bits (178), Expect = 4e-37 Identities = 223/311 (72%), Gaps = 32/311 (10%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTC- 462 || ||||||||| |||||||||||||||||||||||| |||||| ||||| ||| Sbjct 23601 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTCATTGGGCTGTAC 23542 Query 463 -AAACCCGTGCGCGTAATGAAAGTGAA--------CGG-------AGGTGGGAAC----- 501 |||||| ||| | |||||| || ||| |||||||| | Sbjct 23541 GAAACCCAAAGGCGCAGTGAAAGCGAGGGTCGCTCCGGGCGATCCAGGTGGGATCTCCGC 23482 Query 502 ----CCGTGAGGGT---GCACCATCGACCGATCCTGATGTCTTCGGA--TGGATTTGAGT 552 ||| | ||| |||||| || || ||| | | |||| ||| ||| Sbjct 23481 CCGTCCGCGGGGGGAGCGCACCACCGGCCCGTCCCGTCTGCGTCGGCAGTGGGGCGGAGC 23422 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 ||||| | | ||||||||||||||||||||||||||||||| || |||||||| Sbjct 23421 TAGAGCGTGCACGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGAACGAAGCCAG 23362 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||||||||||||| | || |||| ||||| |||||||||||||||||||| ||||| Sbjct 23361 AGGAAACTCTGGTGGAAGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGG 23302 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 23301 TATAGGGGCGA 23291 Score = 161 bits (178), Expect = 4e-37 Identities = 223/311 (72%), Gaps = 32/311 (10%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTC- 462 || ||||||||| |||||||||||||||||||||||| |||||| ||||| ||| Sbjct 29961 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTCATTGGGCTGTAC 29902 Query 463 -AAACCCGTGCGCGTAATGAAAGTGAA--------CGG-------AGGTGGGAAC----- 501 |||||| ||| | |||||| || ||| |||||||| | Sbjct 29901 GAAACCCAAAGGCGCAGTGAAAGCGAGGGTCGCTCCGGGCGATCCAGGTGGGATCTCCGC 29842 Query 502 ----CCGTGAGGGT---GCACCATCGACCGATCCTGATGTCTTCGGA--TGGATTTGAGT 552 ||| | ||| |||||| || || ||| | | |||| ||| ||| Sbjct 29841 CCGTCCGCGGGGGGAGCGCACCACCGGCCCGTCCCGTCTGCGTCGGCAGTGGGGCGGAGC 29782 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 ||||| | | ||||||||||||||||||||||||||||||| || |||||||| Sbjct 29781 TAGAGCGTGCACGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGAACGAAGCCAG 29722 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||||||||||||| | || |||| ||||| |||||||||||||||||||| ||||| Sbjct 29721 AGGAAACTCTGGTGGAAGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGG 29662 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 29661 TATAGGGGCGA 29651 Score = 145 bits (160), Expect = 3e-32 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 24153 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 24094 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||| ||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 24093 ACTGGCACGAGTCCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 24034 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 24033 AGAGAGTTCAAGAGTACGTGAAA 24011 Score = 145 bits (160), Expect = 3e-32 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 30512 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 30453 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||| ||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 30452 ACTGGCACGAGTCCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 30393 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 30392 AGAGAGTTCAAGAGTACGTGAAA 30370 >seq623 Length=477766 Score = 109 bits (120), Expect = 2e-21 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||| | || |||| |||||| | | ||| | |||| || Sbjct 398620 GAGTCGAGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAAGTCCATCTGAGGCTATAT 398679 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| ||| ||||||||| ||||||| ||| ||||| ||||||| |||||| | Sbjct 398680 TCTGGCACGAGTCCGATAGCGGACAAGTACCATGAGAGAAAGTTGAAAAGAACTTTG--A 398737 Query 160 AGAG 163 |||| Sbjct 398738 AGAG 398741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079907078600