Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2100 262 6e-68 seq885 262 6e-68 seq695 262 6e-68 >seq2100 Length=41576 Score = 262 bits (290), Expect = 6e-68 Identities = 214/254 (84%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 2450 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 2391 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----CCAGC-CACC- 124 | |||| || | ||||| |||||| | |||||||||||||| || || || | Sbjct 2390 C-TCAATCT-CGTGTGGCTAAAAGCCACTCGTCCCTCTAAGAAGTTGCGCCGGCACATCG 2333 Query 125 AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | | ||| ||||||| ||| || |||||||||||||||||||||||||| Sbjct 2332 AAGGACCGGCGAA----CTATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCA 2277 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2276 GACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGA 2217 Query 245 GCTATCAATCTGTC 258 |||||||||||||| Sbjct 2216 GCTATCAATCTGTC 2203 Score = 262 bits (290), Expect = 6e-68 Identities = 214/254 (84%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 18534 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 18475 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----CCAGC-CACC- 124 | |||| || | ||||| |||||| | |||||||||||||| || || || | Sbjct 18474 C-TCAATCT-CGTGTGGCTAAAAGCCACTCGTCCCTCTAAGAAGTTGCGCCGGCACATCG 18417 Query 125 AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | | ||| ||||||| ||| || |||||||||||||||||||||||||| Sbjct 18416 AAGGACCGGCGAA----CTATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCA 18361 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 18360 GACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGA 18301 Query 245 GCTATCAATCTGTC 258 |||||||||||||| Sbjct 18300 GCTATCAATCTGTC 18287 Score = 262 bits (290), Expect = 6e-68 Identities = 214/254 (84%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 21868 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 21809 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----CCAGC-CACC- 124 | |||| || | ||||| |||||| | |||||||||||||| || || || | Sbjct 21808 C-TCAATCT-CGTGTGGCTAAAAGCCACTCGTCCCTCTAAGAAGTTGCGCCGGCACATCG 21751 Query 125 AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | | ||| ||||||| ||| || |||||||||||||||||||||||||| Sbjct 21750 AAGGACCGGCGAA----CTATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCA 21695 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 21694 GACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGA 21635 Query 245 GCTATCAATCTGTC 258 |||||||||||||| Sbjct 21634 GCTATCAATCTGTC 21621 Score = 262 bits (290), Expect = 6e-68 Identities = 214/254 (84%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 29155 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 29096 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----CCAGC-CACC- 124 | |||| || | ||||| |||||| | |||||||||||||| || || || | Sbjct 29095 C-TCAATCT-CGTGTGGCTAAAAGCCACTCGTCCCTCTAAGAAGTTGCGCCGGCACATCG 29038 Query 125 AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | | ||| ||||||| ||| || |||||||||||||||||||||||||| Sbjct 29037 AAGGACCGGCGAA----CTATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCA 28982 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 28981 GACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGA 28922 Query 245 GCTATCAATCTGTC 258 |||||||||||||| Sbjct 28921 GCTATCAATCTGTC 28908 >seq885 Length=324208 Score = 262 bits (290), Expect = 6e-68 Identities = 214/254 (84%), Gaps = 13/254 (5%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 24718 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 24777 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----CCAGC-CACC- 124 | |||| || | ||||| |||||| | |||||||||||||| || || || | Sbjct 24778 C-TCAATCT-CGTGTGGCTAAAAGCCACTCGTCCCTCTAAGAAGTTGCGCCGGCACATCG 24835 Query 125 AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | | ||| ||||||| ||| || |||||||||||||||||||||||||| Sbjct 24836 AAGGACCGGCGAA----CTATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCA 24891 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 24892 GACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGA 24951 Query 245 GCTATCAATCTGTC 258 |||||||||||||| Sbjct 24952 GCTATCAATCTGTC 24965 >seq695 Length=442779 Score = 262 bits (290), Expect = 6e-68 Identities = 214/254 (84%), Gaps = 13/254 (5%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 32376 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 32435 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----CCAGC-CACC- 124 | |||| || | ||||| |||||| | |||||||||||||| || || || | Sbjct 32436 C-TCAATCT-CGTGTGGCTAAAAGCCACTCGTCCCTCTAAGAAGTTGCGCCGGCACATCG 32493 Query 125 AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | | ||| ||||||| ||| || |||||||||||||||||||||||||| Sbjct 32494 AAGGACCGGCGAA----CTATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCA 32549 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 32550 GACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGA 32609 Query 245 GCTATCAATCTGTC 258 |||||||||||||| Sbjct 32610 GCTATCAATCTGTC 32623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796766561292