Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2100 131 2e-28 seq695 131 2e-28 seq885 127 2e-27 >seq2100 Length=41576 Score = 131 bits (144), Expect = 2e-28 Identities = 137/177 (77%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| ||||||||||||||| | || ||||| ||| Sbjct 1712 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTCGGTAGCCTGAATAATGGTGCAT 1771 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | |||||||||||||| ||||| | ||| || ||||||| Sbjct 1772 GGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGTAATGA 1829 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 1830 TTAACAGGGACAAACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 1886 Score = 131 bits (144), Expect = 2e-28 Identities = 137/177 (77%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| ||||||||||||||| | || ||||| ||| Sbjct 17796 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTCGGTAGCCTGAATAATGGTGCAT 17855 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | |||||||||||||| ||||| | ||| || ||||||| Sbjct 17856 GGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGTAATGA 17913 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 17914 TTAACAGGGACAAACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 17970 Score = 131 bits (144), Expect = 2e-28 Identities = 137/177 (77%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| ||||||||||||||| | || ||||| ||| Sbjct 21130 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTCGGTAGCCTGAATAATGGTGCAT 21189 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | |||||||||||||| ||||| | ||| || ||||||| Sbjct 21190 GGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGTAATGA 21247 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 21248 TTAACAGGGACAAACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 21304 Score = 131 bits (144), Expect = 2e-28 Identities = 137/177 (77%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| ||||||||||||||| | || ||||| ||| Sbjct 28417 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTCGGTAGCCTGAATAATGGTGCAT 28476 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | |||||||||||||| ||||| | ||| || ||||||| Sbjct 28477 GGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGTAATGA 28534 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 28535 TTAACAGGGACAAACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 28591 >seq695 Length=442779 Score = 131 bits (144), Expect = 2e-28 Identities = 137/177 (77%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| ||||||||||||||| | || ||||| ||| Sbjct 33114 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTCGGTAGCCTGAATAATGGTGCAT 33055 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | |||||||||||||| ||||| | ||| || ||||||| Sbjct 33054 GGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGTAATGA 32997 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 32996 TTAACAGGGACAAACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 32940 >seq885 Length=324208 Score = 127 bits (140), Expect = 2e-27 Identities = 137/178 (77%), Gaps = 5/178 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| ||||||||||||||| | || ||||| ||| Sbjct 25458 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTCGGTAGCCTGAATAATGGTGCAT 25399 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | |||||||||||||| ||||| | ||| || ||||||| Sbjct 25398 GGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTTCGGAACGGAGGTAATGA 25340 Query 130 -TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 25339 TTTAACAGGGACAAACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 25282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511978513280