Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2100 428 1e-117 seq885 425 2e-116 seq695 425 2e-116 >seq2100 Length=41576 Score = 428 bits (474), Expect = 1e-117 Identities = 424/537 (79%), Gaps = 36/537 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | |||||| || |||| ||||| | ||||||||| Sbjct 1475 GTACTCATTCCAATTACGGGGCCTCGAAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 1416 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1415 TCCCCGTGCCGGGAGTGGGTAAGTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 1356 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 1355 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAAACATGGT 1296 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | ||||||||| | ||||||||||||| ||||||| || | |||||||| Sbjct 1295 AGGCATATCACGTACCATCGACATTTGATAGGGCAGACATTTGAAAGATGCGTCGCCGGC 1236 Query 240 TC--AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA---GGA-GCC------ 285 | ||||||||||||| | ||||||| || ||||||| ||| ||| Sbjct 1235 ACAAAAGGCCATGCGATCAGCACAAAGTTATCCAGAGTCACCAATTGGGACGCCGCCCGC 1176 Query 286 --CCGAAG-GGCG---------TTGGTTTTTTATCTAATAAATACACCCCTTC--CGA-A 330 |||||| |||| |||| |||| | |||||||| | | | ||| ||| Sbjct 1175 CGCCGAAGCGGCGAAACGACGATTGG-TTTTGAACTAATAAAAGCGCTCTTTCCACGAGG 1117 Query 331 GTCGGGGTTT--TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 ||||| | || |||||||||||||||||||||| |||| |||||||| |||| | | Sbjct 1116 GTCGGAGCTTGCGAAGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCG 1057 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATT 447 | ||| || ||| |||||||||||||||||||||| ||||||| || | | | | Sbjct 1056 TGTCATCTAAGGAACCTCGACTGATTTAATGAGCCATTCGCGGTTTCACCGTGAAACAGT 997 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 996 G--TGAACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 942 Score = 428 bits (474), Expect = 1e-117 Identities = 424/537 (79%), Gaps = 36/537 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | |||||| || |||| ||||| | ||||||||| Sbjct 17559 GTACTCATTCCAATTACGGGGCCTCGAAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 17500 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 17499 TCCCCGTGCCGGGAGTGGGTAAGTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 17440 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 17439 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAAACATGGT 17380 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | ||||||||| | ||||||||||||| ||||||| || | |||||||| Sbjct 17379 AGGCATATCACGTACCATCGACATTTGATAGGGCAGACATTTGAAAGATGCGTCGCCGGC 17320 Query 240 TC--AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA---GGA-GCC------ 285 | ||||||||||||| | ||||||| || ||||||| ||| ||| Sbjct 17319 ACAAAAGGCCATGCGATCAGCACAAAGTTATCCAGAGTCACCAATTGGGACGCCGCCCGC 17260 Query 286 --CCGAAG-GGCG---------TTGGTTTTTTATCTAATAAATACACCCCTTC--CGA-A 330 |||||| |||| |||| |||| | |||||||| | | | ||| ||| Sbjct 17259 CGCCGAAGCGGCGAAACGACGATTGG-TTTTGAACTAATAAAAGCGCTCTTTCCACGAGG 17201 Query 331 GTCGGGGTTT--TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 ||||| | || |||||||||||||||||||||| |||| |||||||| |||| | | Sbjct 17200 GTCGGAGCTTGCGAAGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCG 17141 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATT 447 | ||| || ||| |||||||||||||||||||||| ||||||| || | | | | Sbjct 17140 TGTCATCTAAGGAACCTCGACTGATTTAATGAGCCATTCGCGGTTTCACCGTGAAACAGT 17081 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17080 G--TGAACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 17026 Score = 428 bits (474), Expect = 1e-117 Identities = 424/537 (79%), Gaps = 36/537 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | |||||| || |||| ||||| | ||||||||| Sbjct 20893 GTACTCATTCCAATTACGGGGCCTCGAAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 20834 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 20833 TCCCCGTGCCGGGAGTGGGTAAGTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 20774 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 20773 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAAACATGGT 20714 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | ||||||||| | ||||||||||||| ||||||| || | |||||||| Sbjct 20713 AGGCATATCACGTACCATCGACATTTGATAGGGCAGACATTTGAAAGATGCGTCGCCGGC 20654 Query 240 TC--AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA---GGA-GCC------ 285 | ||||||||||||| | ||||||| || ||||||| ||| ||| Sbjct 20653 ACAAAAGGCCATGCGATCAGCACAAAGTTATCCAGAGTCACCAATTGGGACGCCGCCCGC 20594 Query 286 --CCGAAG-GGCG---------TTGGTTTTTTATCTAATAAATACACCCCTTC--CGA-A 330 |||||| |||| |||| |||| | |||||||| | | | ||| ||| Sbjct 20593 CGCCGAAGCGGCGAAACGACGATTGG-TTTTGAACTAATAAAAGCGCTCTTTCCACGAGG 20535 Query 331 GTCGGGGTTT--TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 ||||| | || |||||||||||||||||||||| |||| |||||||| |||| | | Sbjct 20534 GTCGGAGCTTGCGAAGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCG 20475 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATT 447 | ||| || ||| |||||||||||||||||||||| ||||||| || | | | | Sbjct 20474 TGTCATCTAAGGAACCTCGACTGATTTAATGAGCCATTCGCGGTTTCACCGTGAAACAGT 20415 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20414 G--TGAACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 20360 Score = 80.6 bits (88), Expect = 8e-13 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | |||||| || |||| ||||| | ||||||||| Sbjct 28180 GTACTCATTCCAATTACGGGGCCTCGAAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 28121 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCG 87 | |||||| ||||| ||||||| ||||| Sbjct 28120 T-CCCGTGCCGGGAGTGGGTAAGTTGCG 28094 >seq885 Length=324208 Score = 425 bits (470), Expect = 2e-116 Identities = 423/537 (79%), Gaps = 36/537 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | |||||| || |||| ||||| | ||||||||| Sbjct 25695 GTACTCATTCCAATTACGGGGCCTCGAAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 25754 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 25755 TCCCCGTGCCGGGAGTGGGTAAGTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 25814 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 25815 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAAACATGGT 25874 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | ||||||||| | ||||||||||||| ||||||| || | |||||||| Sbjct 25875 AGGCATATCACGTACCATCGACATTTGATAGGGCAGACATTTGAAAGATGCGTCGCCGGC 25934 Query 240 TC--AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA---GGA-GC--CCCG- 288 | ||||||||||||| | ||||||| || ||||||| ||| || |||| Sbjct 25935 ACAAAAGGCCATGCGATCAGCACAAAGTTATCCAGAGTCACCAATTGGGACGCCGCCCGC 25994 Query 289 ------AAGGGCG---------TTGGTTTTTTATCTAATAAATACACCCCTTC--CGA-A 330 || |||| |||| |||| | |||||||| | | | ||| ||| Sbjct 25995 CGCCGAAACGGCGAAACGACGATTGG-TTTTGAACTAATAAAAGCGCTCTTTCCACGAGG 26053 Query 331 GTCGGGGTTT--TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 ||||| | || |||||||||||||||||||||| |||| |||||||| |||| | | Sbjct 26054 GTCGGAGCTTGCGAAGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCG 26113 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATT 447 | ||| || ||| |||||||||||||||||||||| ||||||| || | | | | Sbjct 26114 TGTCATCTAAGGAACCTCGACTGATTTAATGAGCCATTCGCGGTTTCACCGTGAAACAGT 26173 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26174 G--TGAACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 26228 >seq695 Length=442779 Score = 425 bits (470), Expect = 2e-116 Identities = 423/537 (79%), Gaps = 36/537 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | |||||| || |||| ||||| | ||||||||| Sbjct 33351 GTACTCATTCCAATTACGGGGCCTCGAAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 33410 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 33411 TCCCCGTGCCGGGAGTGGGTAAGTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 33470 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 33471 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAAACATGGT 33530 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | ||||||||| | ||||||||||||| ||||||| || | |||||||| Sbjct 33531 AGGCATATCACGTACCATCGACATTTGATAGGGCAGACATTTGAAAGATGCGTCGCCGGC 33590 Query 240 TC--AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA---GGA-GC--CCCG- 288 | ||||||||||||| | ||||||| || ||||||| ||| || |||| Sbjct 33591 ACAAAAGGCCATGCGATCAGCACAAAGTTATCCAGAGTCACCAATTGGGACGCCGCCCGC 33650 Query 289 ------AAGGGCG---------TTGGTTTTTTATCTAATAAATACACCCCTTC--CGA-A 330 || |||| |||| |||| | |||||||| | | | ||| ||| Sbjct 33651 CGCCGAAACGGCGAAACGACGATTGG-TTTTGAACTAATAAAAGCGCTCTTTCCACGAGG 33709 Query 331 GTCGGGGTTT--TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 ||||| | || |||||||||||||||||||||| |||| |||||||| |||| | | Sbjct 33710 GTCGGAGCTTGCGAAGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCG 33769 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATT 447 | ||| || ||| |||||||||||||||||||||| ||||||| || | | | | Sbjct 33770 TGTCATCTAAGGAACCTCGACTGATTTAATGAGCCATTCGCGGTTTCACCGTGAAACAGT 33829 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33830 G--TGAACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 33884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510334569472