Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq677 123 2e-23 seq88 123 2e-23 >seq677 Length=433858 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||| ||||| || || | || | ||| |||| ||| |||||||||| | ||| || || Sbjct 164085 TTCCCCCCACACATCAGCCAAGCCTGGGCACTCGTGAGGACACATCAAAGTCCAGTCTCC 164026 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 || | ||| || | ||||| || | || || ||||| | ||||||||| | ||| | Sbjct 164025 ATTTTCTTCCACTCTGCGCATGAACAAGTCCGGGATCCACATGGCGTAGAACAAATCCCT 163966 Query 66382 TGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 || | ||||||||| || ||| || || || ||| | ||||||||||||||||| Sbjct 163965 GGCCCTCTGCTCCTCAGCACCAGTG-TTCTTCTTCAGGTCCAAGAACTCAAAGATGTCGG 163907 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACG 66470 |||||||||| |||||||| | ||| |||| Sbjct 163906 CATGCCATGGCTCCAGGTAAACGGCAAACG 163877 Score = 109 bits (120), Expect = 4e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 ||| ||||||||||| ||||| ||||| || ||||||| || || || |||||||| Sbjct 166438 CTCATCAGGAGCGGTGTACTCCACAATCTCTGTGCACAAGTTGCTACACTTGATGGTGCC 166379 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 || ||||| || || ||| || || || || ||||||| |||||||||||| || Sbjct 166378 CAGGTTCTGCTGGTTGGACTTTCGGTTACAGCTGTCTTTGTACAACATGTACGGAGTTCC 166319 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 ||||| || |||||||||||||||| ||| Sbjct 166318 TGTCTCCGTCTGTGACTCAATGATGGCGTACCA 166286 >seq88 Length=1720321 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||| ||||| || || | || | ||| |||| ||| |||||||||| | ||| || || Sbjct 1607728 TTCCCCCCACACATCAGCCAAGCCTGGGCACTCGTGAGGACACATCAAAGTCCAGTCTCC 1607787 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 || | ||| || | ||||| || | || || ||||| | ||||||||| | ||| | Sbjct 1607788 ATTTTCTTCCACTCTGCGCATGAACAAGTCCGGGATCCACATGGCGTAGAACAAATCCCT 1607847 Query 66382 TGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 || | ||||||||| || ||| || || || ||| | ||||||||||||||||| Sbjct 1607848 GGCCCTCTGCTCCTCAGCACCAGTG-TTCTTCTTCAGGTCCAAGAACTCAAAGATGTCGG 1607906 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACG 66470 |||||||||| |||||||| | ||| |||| Sbjct 1607907 CATGCCATGGCTCCAGGTAAACGGCAAACG 1607936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397547009900480