Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq15357 230 4e-58 seq60226 217 3e-54 seq26209 210 4e-52 seq67764 116 6e-24 seq46941 91.5 3e-16 >seq15357 Length=12269 Score = 230 bits (254), Expect = 4e-58 Identities = 174/201 (87%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 75 CAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC-CGAATTCTGCTTCGGT 133 |||| || ||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 10798 CAGCCCAGGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGGCGAATACTGCTTCACA 10857 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 10858 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCG 10917 Query 194 CCACAAGCCAGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-G 251 |||||||||||||| | |||||||||||||||||| |||| || || || || | || Sbjct 10918 CCACAAGCCAGTTATTTCCTGTGGTAACTTTTCTGACACCCCTTGCGTCGAACTAGGACA 10977 Query 252 GGACTAAAGGATCGATAGGCC 272 | | | |||||||||||||| Sbjct 10978 AGTCGACAGGATCGATAGGCC 10998 >seq60226 Length=1877 Score = 217 bits (240), Expect = 3e-54 Identities = 171/201 (85%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 75 CAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC-CGAATTCTGCTTCGGT 133 ||||||| |||| ||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 970 CAGCTCAAGTTCTTTATTAATGGGTGAACAATCCAACGCTTGGGCGAATATTGCTTCGCA 1029 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 1030 ATGGTAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCG 1089 Query 194 CCACAAGCCAGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-G 251 |||||||||||||| | |||||||||||||||||| |||| || || || || | || Sbjct 1090 CCACAAGCCAGTTATTTCCTGTGGTAACTTTTCTGACACCCCTTGCGTCGAACTAGGACA 1149 Query 252 GGACTAAAGGATCGATAGGCC 272 | | | |||||||||||||| Sbjct 1150 AGTCGACAGGATCGATAGGCC 1170 >seq26209 Length=2486 Score = 210 bits (232), Expect = 4e-52 Identities = 171/204 (84%), Gaps = 9/204 (4%) Strand=Plus/Minus Query 75 CAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC-CGAATTCTGCTTCGGT 133 ||||||| |||| ||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1609 CAGCTCAAGTTCTTTATTAATGGGTGAACAATCCAACGCTTGGGCGAATATTGCTTCGCA 1550 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 1549 ATGGTAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCG 1490 Query 194 CCACAAGCCAGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 |||||||||||||| | ||||||||||||||| || |||| || || || || | ||| Sbjct 1489 CCACAAGCCAGTTATTTCCTGTGGTAACTTTTTTGACACCCCTTGCATC---TTACAAGG 1433 Query 253 ----GACTAAAGGATCGATAGGCC 272 | | | |||||||||||||| Sbjct 1432 ACAAGTCGACAGGATCGATAGGCC 1409 >seq67764 Length=6522 Score = 116 bits (128), Expect = 6e-24 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 5760 ATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAA 5701 Query 220 CTTTTCTGGCAC 231 |||||||| ||| Sbjct 5700 CTTTTCTGACAC 5689 >seq46941 Length=11628 Score = 91.5 bits (100), Expect = 3e-16 Identities = 82/103 (80%), Gaps = 15/103 (15%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||| |||||| | ||| |||||||||||||||||| | Sbjct 2843 ATGATAGGAAGAGCAGACATCAA----TCA----------TCGCTATGAACGCTTGGCCG 2888 Query 194 CCACAAGCCAGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||||| |||||| ||||||||||||| |||| || Sbjct 2889 CCACAAGCCAGTTACTCCCTGCGGTAACTTTTCTGACACCCCT 2931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853267005792