Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq116518 419 8e-115 seq24947 134 5e-29 seq67625 116 1e-23 seq7688 100 9e-19 seq4649 98.7 3e-18 seq7101 78.8 3e-12 seq89450 75.2 4e-11 >seq116518 Length=6790 Score = 419 bits (464), Expect = 8e-115 Identities = 246/255 (96%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 2455 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCCGATTCTGCCAAGCCCGTTCCCT 2514 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||| | |||||||||||||||||||||| || |||||||||||||||||| Sbjct 2515 TGGCTGTGGTTTCACCAGATAGTAGATAGGGACAGTGGAAACCTCGTTAATCCATTCATG 2574 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2575 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 2634 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2635 CCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 2694 Query 519 CACATTGCGTCAACA 533 ||||||||| ||||| Sbjct 2695 CACATTGCGGCAACA 2709 >seq24947 Length=1818 Score = 134 bits (148), Expect = 5e-29 Identities = 82/87 (94%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 757 GAGTCATAGATACTCCCGCCGTTTACCAGCGCTTCATTGAATTTCTTCACTTTGACATTC 698 Query 501 AGAGCACTGGGCAGAAATCACATTGCG 527 |||||||||| |||||||||||||||| Sbjct 697 AGAGCACTGGACAGAAATCACATTGCG 671 Score = 109 bits (120), Expect = 2e-21 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | Sbjct 894 AGTAGATAGGGACAGTGGGAATCTCGTGGATCCATCTATGCGCGTCACTAATTAGATGGC 835 Query 419 GAGGCATTTGGCT 431 ||||||||||||| Sbjct 834 GAGGCATTTGGCT 822 >seq67625 Length=4228 Score = 116 bits (128), Expect = 1e-23 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 451 TACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGG 510 || |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 2245 TAATCCCGCCGTTTACCAGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGG 2186 Query 511 GCAGAAATCACATTGCG 527 |||||||||||||||| Sbjct 2185 ACAGAAATCACATTGCG 2169 Score = 105 bits (116), Expect = 2e-20 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| | Sbjct 2788 AGTAGAAAGGGACAGTGGGAATCTCGTGGATCCATCTATGCGCGTCACTAATTAGATGGC 2729 Query 419 GAGGCATTTGGCT 431 ||||||||||||| Sbjct 2728 GAGGCATTTGGCT 2716 >seq7688 Length=30889 Score = 100 bits (110), Expect = 9e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 4263 TCAAGCTCAACAGGGCCTTCTTTCCCCGCCGATTCTGCCAAGCCCGTTCCCTTGGCTGTG 4204 Query 347 GTT 349 ||| Sbjct 4203 GTT 4201 >seq4649 Length=1931 Score = 98.7 bits (108), Expect = 3e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| | Sbjct 1453 GACTAGAGTCAAGACCAACAGGGTCTTCTTTCCCCGCCGATTCTGCCAAGCCCGTTCTGT 1394 Query 339 TGGCTGTGG 347 ||||||||| Sbjct 1393 TGGCTGTGG 1385 >seq7101 Length=20075 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 317 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 ||||| ||||||||||||||||||||||||||||| | ||||| ||||||||| Sbjct 2668 GATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCACCAGATAATAGATAGGG 2720 >seq89450 Length=8535 Score = 75.2 bits (82), Expect = 4e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 317 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 ||||| |||||||||||||| || ||||||||||| | |||||||||||||||| Sbjct 25 GATTCTGCCAAGCCCGTTCCTTTAGCTGTGGTTTCACCAGATAGTAGATAGGGA 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633031610336