Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq33510 132 4e-26 seq73127 87.8 1e-12 >seq33510 Length=29102 Score = 132 bits (146), Expect = 4e-26 Identities = 143/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 ||||| ||||||||| |||| || ||| | |||||||| ||||| ||||||||||||||| Sbjct 28037 TTCCCTATCGAGTATCAGGACATCTGGAGAATGTACAAGAAGGCTGAAGCTTCCTTCTGG 27978 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGG 61184 || | ||||| || ||| | |||||||| ||||| ||||||||| || | | || Sbjct 27977 ACAGCCGAGGAAGTGGATCTCTCCAAAGATATGAAGGACTGGGAGTCGCTGAAACCGC-A 27919 Query 61185 TGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAA 61244 || || || || |||||||||| | || ||||| || || ||||||||||| || Sbjct 27918 AGAGCAGCACTTTGTTAAACATGTTCTAGCTTTCTTCGCAGCCAGTGACGGTATCGTTAA 27859 Query 61245 TGAGAAT 61251 |||||| Sbjct 27858 CGAGAAT 27852 Score = 118 bits (130), Expect = 8e-22 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||| |||||||||||||| || ||||| || || ||| ||| || || ||||| | || Sbjct 26794 ATTATTCAATGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCCGACTGGGCGCTGAA 26735 Query 61455 TTGGATC-ACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| |||| ||| | || | | | ||||| || | || ||||| | ||| Sbjct 26734 GTGGATCGACCA---CAAAGTAGCCAGGTACAGCGAACGCGTGGTAGCCTTTGCCGCGGT 26678 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | |||||| ||||| ||||| |||||||| ||| | |||||||||||| | Sbjct 26677 CGAGGGCATCTTTTTCTCGGGATCATTTGCTGCAATCTTCTGGCTCAAGAAACGTGGATT 26618 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGA 61598 ||||| || || || ||| |||||| Sbjct 26617 AATGCCAGGCCTTACATTCTCCAATGA 26591 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||| | ||| || ||||| || | || ||||| | || |||||||| ||||||| Sbjct 27196 TGGAAAGGTTCAGCCAAGAGGTTCAGGCATCAGAGGCTAGGTGCTTCTACGGATTCCAGA 27137 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||| || || ||| | ||||| || ||||||||| | || ||||| || || |||| || Sbjct 27136 TTGCAATCGAAAATATTCACTCAGAAATGTACAGTTTACTTATCGACACATATATCAAGG 27077 Query 61376 A 61376 | Sbjct 27076 A 27076 >seq73127 Length=3785 Score = 87.8 bits (96), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211 ||| || ||||| ||||| |||| |||||| |||| || || || || | || | ||| Sbjct 1305 CCATGCGTAGAAGTGCATGGATGTCAATTTTCCATAGTTTGGTTCAGCAATGTGGACATT 1364 Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACG 65271 || || || || ||||| |||||| ||||||||||| ||||| | || ||| | | Sbjct 1365 CAGAGATTGGCTTTGATCAATGTAAGCGCCACGATCTGCGGCCATCTTGATTATA-GTCT 1423 Query 65272 TC-CCGATATCTCCCAGACGGTCTTGTACAGG 65302 || || || |||||||| |||||||| ||| Sbjct 1424 TCTGTGAAATTTCCCAGACAGTCTTGTAAAGG 1455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396925471346480