Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq911 206 4e-51 seq8939 114 2e-23 seq416 109 9e-22 >seq911 Length=133830 Score = 206 bits (228), Expect = 4e-51 Identities = 181/223 (81%), Gaps = 13/223 (6%) Strand=Plus/Plus Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAA 94 |||| | |||||||||||||||| |||||||||||||| || | || || ||||| || Sbjct 30115 GCCCCGGACATCTAAGGGCATCAGAGACCTGTTATTGC-TCCATCTCGTAT-GGCTGAAA 30172 Query 95 GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG-------CTATTT 147 |||| | |||||||||||||| || | |||| ||| ||| |||||| Sbjct 30173 GCCATTTGTCCCTCTAAGAAGTTCGCGGCTCACCA----CGACGGGTGGCTGAACTATTT 30228 Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207 |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30229 AGCAAGCAAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 30288 Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 |||||||||||||||||| ||| | ||||||||||||||| || Sbjct 30289 AACGGCCATGCACCACCATCCACAAAATCAAGAAAGAGCTCTC 30331 Score = 201 bits (222), Expect = 2e-49 Identities = 192/239 (80%), Gaps = 19/239 (8%) Strand=Plus/Plus Query 31 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCT 90 |||||||| || |||||||||||||||||||||||||||||| || | || || |||| Sbjct 32538 TGCGGCCCGGA-CATCTAAGGGCATCACAGACCTGTTATTGC-TCCATCTCGTAT-GGCT 32594 Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGG--GC-----T 143 | |||||| | |||||||||||||| || | |||| ||| ||| || | Sbjct 32595 GAAAGCCATTTGTCCCTCTAAGAAGTTCGCGGCTCACCA----CGACGGGTGGCAGGAAT 32650 Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 |||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 32651 ATTTAGCAAGCAAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAAC 32710 Query 204 TAAGAACGGCCAT----GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||| |||||| || ||| | ||||||||||||||| |||||||||| Sbjct 32711 TAAGAAAGGCCATCATGGCACCA-CATCCACAAAATCAAGAAAGAGCTCTCAATCTGTC 32768 >seq8939 Length=22933 Score = 114 bits (126), Expect = 2e-23 Identities = 86/101 (85%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | || ||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 21437 TTAGCAAGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTTCACCGACTA 21378 Query 206 AGAACGGC----CATGCACCACCACCCATAGAATCAAGAAA 242 |||||||| | |||||||| | ||| | |||||||||| Sbjct 21377 AGAACGGCCGTACGTGCACCACAATCCACAAAATCAAGAAA 21337 >seq416 Length=148168 Score = 109 bits (120), Expect = 9e-22 Identities = 96/118 (81%), Gaps = 5/118 (4%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | || || |||||||||||||||||||||||||||||||||| |||| |||| Sbjct 82 TTAGCAAGCTAGAGTGTCGTTCGTTATCGGAATTAACCAGACAAATCACTTCACCGACTA 141 Query 206 AGAACGGC----CATGCACCACCACCCATAGAATCAAGAAAGAG-CTATCAATCTGTC 258 ||||| || | |||||||| | ||| | |||||||||| || | ||||| |||| Sbjct 142 AGAACCGCCGTACGTGCACCACAATCCACAAAATCAAGAAAAAGAATCTCAATATGTC 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796633586079