Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq478 239 1e-60 seq4366 176 1e-41 seq584 170 6e-40 seq4273 167 8e-39 seq3904 143 9e-32 seq2378 134 5e-29 seq8304 91.5 5e-16 seq3272 80.6 9e-13 seq1955 80.6 9e-13 >seq478 Length=123072 Score = 239 bits (264), Expect = 1e-60 Identities = 141/147 (96%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||| | ||| ||||||||||||||||||||||||||||| | |||||||||| Sbjct 24662 TCTTTCCCCGCCGGTTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCACCAGATAGTAGA 24603 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 24602 TAGGGACAGTGGGAACCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 24543 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTT 451 ||||||||||||||||||||||||||| Sbjct 24542 TTTGGCTACCTTAAGAGAGTCATAGTT 24516 >seq4366 Length=72505 Score = 176 bits (194), Expect = 1e-41 Identities = 118/132 (89%), Gaps = 5/132 (4%) Strand=Plus/Minus Query 317 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA-----GTAGATAGGGAC 371 ||||| ||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 66422 GATTCTACCAAGCCTGTTCCCTTGGCTGTGGTTTCATGAGATACAGTAGTAGATAGGGAC 66363 Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 66362 AGTGGGAACCTCGTTAATCCATTCATGCATGTCACTAATTAGATGACGAGGCATTTGGCT 66303 Query 432 ACCTTAAGAGAG 443 |||||||||||| Sbjct 66302 ACCTTAAGAGAG 66291 >seq584 Length=167246 Score = 170 bits (188), Expect = 6e-40 Identities = 117/132 (89%), Gaps = 5/132 (4%) Strand=Plus/Plus Query 317 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA-----GTAGATAGGGAC 371 ||||| ||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 111332 GATTCTACCAAGCCTGTTCCCTTGGCTGTGGTTTCATGAGATACAGTAGTAGATAGGGAC 111391 Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 111392 AGTGGGAACCTCGTTAATCCATTCATGCATGTCACTAATTAGATGACGAGGCATTTGGCT 111451 Query 432 ACCTTAAGAGAG 443 || ||||||||| Sbjct 111452 ACTTTAAGAGAG 111463 >seq4273 Length=107360 Score = 167 bits (184), Expect = 8e-39 Identities = 107/116 (92%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 266 TTTCACAAAGTCG--GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG 323 |||||| || || ||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 101193 TTTCACTAAACCGCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCCGATTCTG 101252 Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 101253 CCAAGCCCGTTCCCTTGGCTGTGGTTTCACCAGATAGTAGATAGGGACAGTGGGAA 101308 >seq3904 Length=54149 Score = 143 bits (158), Expect = 9e-32 Identities = 87/92 (95%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 51942 GAGTCATAGTTACTCCCGCCGTTTACCAGCGCTCCATTGAATTTCTTCACTTTGACATTC 51883 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||||||||||||||||||||||||||| |||| Sbjct 51882 AGAGCACTGGGCAGAAATCACATTGCGGCAAC 51851 Score = 134 bits (148), Expect = 5e-29 Identities = 77/79 (97%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 52203 AGATAGTAGATAGGGACAGTGGGAACCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 52144 Query 415 TGACGAGGCATTTGGCTAC 433 ||||||||||||||| ||| Sbjct 52143 TGACGAGGCATTTGGATAC 52125 >seq2378 Length=67137 Score = 134 bits (148), Expect = 5e-29 Identities = 85/92 (92%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 42803 GAGTCATAGTTACTCCCGCCGTTTACCAGCGCTCCATTGAATTGCTTCACTTTGACATTC 42862 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||| |||||||||||||||| |||| Sbjct 42863 AGAGCACTGGACAGAAATCACATTGCGGCAAC 42894 Score = 131 bits (144), Expect = 5e-28 Identities = 84/92 (91%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||| Sbjct 14664 GAGTCATAGTTACTCCCGCCGTTTACCAGTGCTCCATTGAATTGCTTCACTTTGACATTC 14723 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||| |||||||||||||||| |||| Sbjct 14724 AGAGCACTGGACAGAAATCACATTGCGGCAAC 14755 Score = 129 bits (142), Expect = 2e-27 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| Sbjct 14403 AGATAGTAGATAGGGACAATGGGAACCTCGTTAATCCATTCATACGCGTCACTAATTAGA 14462 Query 415 TGACGAGGCATTTGGCTAC 433 ||||||||||||||||||| Sbjct 14463 TGACGAGGCATTTGGCTAC 14481 Score = 125 bits (138), Expect = 2e-26 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||| Sbjct 42542 AGATACTAGATAGGGACAATGGGAACCTCGTTAATCCATTCATACGCGTCACTAATTAGA 42601 Query 415 TGACGAGGCATTTGGCTAC 433 ||||||||||||||||||| Sbjct 42602 TGACGAGGCATTTGGCTAC 42620 >seq8304 Length=32946 Score = 91.5 bits (100), Expect = 5e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 |||| |||||| || |||| |||||| |||| | ||||||||||||||||||| Sbjct 9118 TTTTACTCTACGCAAGGTTTCAGTTCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACCA 9059 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 107 ||| ||||||| ||||||||| ||||||||| |||||| Sbjct 9058 TTTGTCAGATGTACCGCCCCAGTGAAACTCCCCGCCTGAC 9019 >seq3272 Length=70085 Score = 80.6 bits (88), Expect = 9e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||||||| |||||| | |||||||||||||||||| Sbjct 55594 CTCCCACTTATTCTACACCTCTCAAGTCTCTTCACACCACCAGACTAGAGTCAAGCTCAA 55535 Query 297 CA 298 || Sbjct 55534 CA 55533 >seq1955 Length=103388 Score = 80.6 bits (88), Expect = 9e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376 |||| |||||| ||||||||||||||||||||| | | |||||||||||||||||||| Sbjct 18324 ATTCTACCAAGCACGTTCCCTTGGCTGTGGTTTCACCAAATAGTAGATAGGGACAGTGG 18266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634847467232