Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq8939 228 2e-57 seq2363 109 2e-21 >seq8939 Length=22933 Score = 228 bits (252), Expect = 2e-57 Identities = 209/259 (81%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| || ||| | || | ||||| |||||||| ||| | ||||||||||| Sbjct 20566 GTACTCATTCCGATCACAGGGCCTCCGAAGAGGCCTGTATCTTTATCTTTTGTCACTACC 20507 Query 60 TCCCCGTGTCGGGATTGGGTA--ATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | ||| |||||| ||||||| |||| |||||||||| ||||||||||| Sbjct 20506 TCCCCGTGACAGGAGTGGGTATAATTTGCGTGCCTTGTGCCTTCCTTAGATGTGGTAGCG 20447 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||| ||||||||||| | ||||||||| |||| | ||||||||| |||||| Sbjct 20446 GTTTCTCAGACTCCCTCTCCGAATTCGAACCCTGATTCTCGGTTACCCGTCACAACCATG 20387 Query 178 GTAGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAA-ATTTGAATGAACCATCGC 235 || || || || | ||||||||||||||||||| |||||| |||||| | | | |||| Sbjct 20386 ATAAGCGCAATAACTTACCATCGAAAGTTGATAGAGCAGAACTTTTGAAAGGAGCGTCGC 20327 Query 236 CGGCTCAAGGCCATGCGAT 254 ||| |||| || || ||| Sbjct 20326 CGGTGCAAGACCGTGTGAT 20308 >seq2363 Length=105428 Score = 109 bits (120), Expect = 2e-21 Identities = 123/160 (77%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 |||||||||||||||| |||||||| ||||| |||| |||| | || ||||| Sbjct 68960 CATGTATTAGCTCTAGTATTACCACAGTTATGCATGGTATAAGACTTTCTCTGATAAAAC 69019 Query 405 ATAACTGATTTAATGAGCCA--TTCGCAGTTTC-ACTGTATAGAT--TGCTTATACTTAG 459 |||| |||| |||||||||| | | ||||||| ||||| | | | || ||||| | Sbjct 69020 ATAATTGATCTAATGAGCCATCTGCACAGTTTCTGTTGTAT-GTTCAGGATTGTACTTGG 69078 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 || ||| ||||||||||||||| | |||||||||||||| Sbjct 69079 ACGTGCGTGGCTTAATCTTTGAAAAGAGCATATGACTACT 69118 Score = 78.8 bits (86), Expect = 3e-12 Identities = 103/140 (74%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 ||||| ||||| |||| |||| | || ||||| |||| |||| |||||||||| Sbjct 69726 ACCACAGTTATGCATGGTATAAGACTTTCTCTGATAAAACATAATTGATCTAATGAGCCA 69785 Query 425 TTCGCA--GTTTCACTGTATAGATT---GCTTATACTTAGACATGCATGGCTTAATCTTT 479 | ||| ||||| | | || || | || ||||| ||| ||| ||||||||||||| Sbjct 69786 TCTGCACAGTTTCTGT-TGTATGTTCAGGATTGTACTTGGACGTGCGTGGCTTAATCTTT 69844 Query 480 GAGACAAGCATATGACTACT 499 || | |||||||||||||| Sbjct 69845 GAAAAGAGCATATGACTACT 69864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510074372864