Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9509 123 2e-23 seq5542 123 2e-23 seq1416 102 6e-17 >seq9509 Length=48202 Score = 123 bits (136), Expect = 2e-23 Identities = 141/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 ||||| ||||||||| |||| || ||| | |||||||| ||||| |||||||| |||||| Sbjct 27741 TTCCCTATCGAGTATCAGGACATATGGAGAATGTACAAGAAGGCAGAAGCTTCTTTCTGG 27800 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGG 61184 || | |||||||||||| | || ||||| ||||| |||||||| | | | | || Sbjct 27801 ACAGCCGAGGAGGTCGATCTCTCAAAAGATATGAAGGACTGGGAGGGGCTGAAACCGC-A 27859 Query 61185 TGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAA 61244 ||||| || || |||||||||| | || ||||| || || ||||| ||||| || Sbjct 27860 AGAACAGCACTTTGTTAAACATGTTCTAGCTTTCTTCGCAGCCAGTGACGGCATCGTGAA 27919 Query 61245 TGAGAAT 61251 || ||| Sbjct 27920 CGAAAAT 27926 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||| ||||| |||||||| || ||||| || || ||| ||| || || ||||| | || Sbjct 29069 ATTATTCAACGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAA 29128 Query 61455 TTGGATC-ACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| |||| ||| | || | | | ||||| || | || ||||| | || Sbjct 29129 GTGGATCGACCA---CAAAGTAGCCAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGT 29185 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | |||||| ||||| ||||| |||||||| ||| | |||||||||||| | Sbjct 29186 CGAGGGCATCTTTTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAGAAACGTGGATT 29245 Query 61572 TATGCCCGGTCTGACCTTC 61590 ||||| || || || ||| Sbjct 29246 AATGCCAGGCCTTACATTC 29264 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||| | ||| || ||||| || | |||||||| | || |||||||| ||||||| Sbjct 28633 TGGAAAGGTTCAGCCAAGAGGTTCAGGCATCGGAGGCTAGGTGCTTCTACGGATTCCAGA 28692 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||| || || ||| | ||||| || ||||||||| | || ||||| || || |||| || Sbjct 28693 TTGCAATCGAAAATATTCACTCAGAAATGTACAGTTTACTTATCGACACATATATCAAGG 28752 Query 61376 A 61376 | Sbjct 28753 A 28753 >seq5542 Length=71200 Score = 123 bits (136), Expect = 2e-23 Identities = 141/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 ||||| ||||||||| |||| || ||| | |||||||| ||||| |||||||| |||||| Sbjct 63086 TTCCCTATCGAGTATCAGGACATATGGAGAATGTACAAGAAGGCAGAAGCTTCTTTCTGG 63145 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGG 61184 || | |||||||||||| | || ||||| ||||| |||||||| | | | | || Sbjct 63146 ACAGCCGAGGAGGTCGATCTCTCAAAAGATATGAAGGACTGGGAGGGGCTGAAACCGC-A 63204 Query 61185 TGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAA 61244 ||||| || || |||||||||| | || ||||| || || ||||| ||||| || Sbjct 63205 AGAACAGCACTTTGTTAAACATGTTCTAGCTTTCTTCGCAGCCAGTGACGGCATCGTGAA 63264 Query 61245 TGAGAAT 61251 || ||| Sbjct 63265 CGAAAAT 63271 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||| ||||| |||||||| || ||||| || || ||| ||| || || ||||| | || Sbjct 64376 ATTATTCAACGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAA 64435 Query 61455 TTGGATC-ACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| |||| ||| | || | | | ||||| || | || ||||| | || Sbjct 64436 GTGGATCGACCA---CAAAGTAGCCAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGT 64492 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | |||||| ||||| ||||| |||||||| ||| | |||||||||||| | Sbjct 64493 CGAGGGCATCTTTTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAGAAACGTGGATT 64552 Query 61572 TATGCCCGGTCTGACCTTC 61590 ||||| || || || ||| Sbjct 64553 AATGCCAGGCCTTACATTC 64571 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||| | ||| || ||||| || | |||||||| | || |||||||| ||||||| Sbjct 63940 TGGAAAGGTTCAGCCAAGAGGTTCAGGCATCGGAGGCTAGGTGCTTCTACGGATTCCAGA 63999 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||| || || ||| | ||||| || ||||||||| | || ||||| || || |||| || Sbjct 64000 TTGCAATCGAAAATATTCACTCAGAAATGTACAGTTTACTTATCGACACATATATCAAGG 64059 Query 61376 A 61376 | Sbjct 64060 A 64060 >seq1416 Length=111358 Score = 102 bits (112), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||| ||||| || || || | ||| || | || ||||||||||| | |||||| || Sbjct 36992 TTCCCCCCAAACCTCATGTAGTCCTGGGCATTCATGGGGACACATCAGGGTCCAATCGCC 36933 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 || |||||| || | ||| || || || || ||||| ||||| || ||||| || | Sbjct 36932 ATTCTGTTCGACTCTCTTCATGAAGAGGTCTGGAATCCATAGGGCATAAAAGAGGTCCCT 36873 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATT-TTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 |||| ||| || || |||||||||| ||| |||| || | || || ||| ||| | Sbjct 36872 GGCTCTTTGTTCTTCCTTGCCGTGATTCTTTTTGCAA-TCCAAAAATTCGTAGACGTCCG 36814 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAA 66468 | ||||| || |||| ||| || ||||| Sbjct 36813 CGTGCCACGGCTCCAAGTAAATTGCGAA 36786 Score = 87.8 bits (96), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211 ||| || ||||| ||||| |||| |||||| |||| || || || || | || | ||| Sbjct 40668 CCATGCGTAGAAGTGCATGGATGTCAATTTTCCATAGTTTGGTTCAGCAATGTGGACATT 40609 Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACG 65271 || || || || ||||| |||||| ||||||||||| ||||| | || ||| | | Sbjct 40608 CAGAGATTGGCTTTGATCAATGTAAGCGCCACGATCTGCGGCCATCTTGATTATA-GTCT 40550 Query 65272 TC-CCGATATCTCCCAGACGGTCTTGTACAGG 65302 || || || |||||||| |||||||| ||| Sbjct 40549 TCTGTGAAATTTCCCAGACCGTCTTGTAAAGG 40518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397463538883760