Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq52171 206 4e-51 seq23663 206 4e-51 seq12455 206 4e-51 seq12362 206 4e-51 seq56793 181 2e-43 >seq52171 Length=211835 Score = 206 bits (228), Expect = 4e-51 Identities = 205/255 (80%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 251 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 194 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 193 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 134 Query 120 ACCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| |||| || | ||||| | |||| |||||| | | |||||||||||||||||| Sbjct 133 ACCCA-ACCTTTCCAGGCAAGGGCAAAGACACGTTGATTCCTTCAGTGTAGCGCGCGTGC 75 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 74 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 17 Query 239 AGGC-CATCTCCCTC 252 | | | | |||||| Sbjct 16 CGCCACTTGTCCCTC 2 >seq23663 Length=6122 Score = 206 bits (228), Expect = 4e-51 Identities = 207/258 (80%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 1504 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 1561 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 1562 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 1621 Query 120 ACCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| |||| || | ||||| | |||| |||||| | | |||||||||||||||||| Sbjct 1622 ACCCA-ACCTTTCCAGGCAAGGGCAAAGACACGTTGATTCCTTCAGTGTAGCGCGCGTGC 1680 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 1681 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 1738 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 1739 CGCCACTTGTCCCTCTAA 1756 >seq12455 Length=71386 Score = 206 bits (228), Expect = 4e-51 Identities = 207/258 (80%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 64365 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 64422 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 64423 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 64482 Query 120 ACCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| |||| || | ||||| | |||| |||||| | | |||||||||||||||||| Sbjct 64483 ACCCA-ACCTTTCCAGGCAAGGGCAAAGACACGTTGATTCCTTCAGTGTAGCGCGCGTGC 64541 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 64542 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 64599 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 64600 CGCCACTTGTCCCTCTAA 64617 >seq12362 Length=1066127 Score = 206 bits (228), Expect = 4e-51 Identities = 207/258 (80%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 325793 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 325850 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 325851 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 325910 Query 120 ACCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| |||| || | ||||| | |||| |||||| | | |||||||||||||||||| Sbjct 325911 ACCCA-ACCTTTCCAGGCAAGGGCAAAGACACGTTGATTCCTTCAGTGTAGCGCGCGTGC 325969 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 325970 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 326027 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 326028 CGCCACTTGTCCCTCTAA 326045 >seq56793 Length=194830 Score = 181 bits (200), Expect = 2e-43 Identities = 199/257 (77%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 40685 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACT-GGAAATTC 40628 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 | |||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 40627 CACGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGTAGGTTCAACGTGTT 40568 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | | | ||||| | |||| |||||| | | ||||||||||| ||| ||| Sbjct 40567 ACCCATCCTTTCCAGGCAAGGGCAAAGACACGTTGATTCCTTCAGTGTAGCGTGCGAGCG 40508 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| ||||||| |||||||||||| ||||||||||| ||||| || | || | ||||| Sbjct 40507 GCCCCGAACATCAAAGGGCATCACATACCTGTTATTG-CTCAATCTCCTGTTG-CTAAAC 40450 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 40449 GCCACTTGTCCCTCTAA 40433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751521652330