Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq23663 226 5e-57 seq12455 226 5e-57 seq12362 226 5e-57 seq56793 129 1e-27 seq30622 95.1 2e-17 >seq23663 Length=6122 Score = 226 bits (250), Expect = 5e-57 Identities = 223/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 2428 TGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTC 2369 Query 100 AAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| ||||| ||||| |||||||||||| ||||||||| | ||||||| Sbjct 2368 AAAGCAGGCGATTTGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 2310 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||||| |||||| | ||| | | ||||||||||| ||||| | |||||| | || Sbjct 2309 ATTTTGCTGGTTT-TCGGAGCTTGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGT 2251 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct 2250 ATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATT 2191 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||| ||| |||||||||| || || Sbjct 2190 TGCCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 2150 >seq12455 Length=71386 Score = 226 bits (250), Expect = 5e-57 Identities = 223/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 65289 TGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTC 65230 Query 100 AAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| ||||| ||||| |||||||||||| ||||||||| | ||||||| Sbjct 65229 AAAGCAGGCGATTTGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 65171 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||||| |||||| | ||| | | ||||||||||| ||||| | |||||| | || Sbjct 65170 ATTTTGCTGGTTT-TCGGAGCTTGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGT 65112 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct 65111 ATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATT 65052 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||| ||| |||||||||| || || Sbjct 65051 TGCCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 65011 >seq12362 Length=1066127 Score = 226 bits (250), Expect = 5e-57 Identities = 223/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 326717 TGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTC 326658 Query 100 AAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| ||||| ||||| |||||||||||| ||||||||| | ||||||| Sbjct 326657 AAAGCAGGCGATTTGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 326599 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||||| |||||| | ||| | | ||||||||||| ||||| | |||||| | || Sbjct 326598 ATTTTGCTGGTTT-TCGGAGCTTGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGT 326540 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct 326539 ATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATT 326480 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||| ||| |||||||||| || || Sbjct 326479 TGCCAAGAATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 326439 >seq56793 Length=194830 Score = 129 bits (142), Expect = 1e-27 Identities = 145/189 (77%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGTAATGA 189 ||||||| ||||||||| | || |||||||||| |||||| | ||| | | ||||||| Sbjct 39890 GAATAATGGAATAGGACCT-CGCTTCTATTTTGCTGGTTT-TCGGAGCTTGAGGTAATGA 39947 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| | ||||| | ||||| ||| |||||||||||||||||| Sbjct 39948 TTAAGAGGGACTGATGGGGGCATTCGTATTACGGTGTTGGAGGTGAAATTCTTGGATCGC 40007 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| ||||| || |||||| || ||||| |||||||||||| ||| ||||||| Sbjct 40008 CGTAAGACGAACTAGTGGGAAAGCATTTGCCAAGAATGTTTTCATTAGTCA-AGAACGAA 40066 Query 310 AGTTAGGGG 318 |||||| || Sbjct 40067 AGTTAGAGG 40075 >seq30622 Length=78117 Score = 95.1 bits (104), Expect = 2e-17 Identities = 174/250 (70%), Gaps = 25/250 (10%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCAT 130 || |||| |||||||||||||| |||||||||||||| || || || | Sbjct 16718 ACATTTATTTTGAAAAAATTAG--TGTTCAAAGCAGGCGATTT-TCCTATG--------T 16766 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGTAATG 188 ||| || | ||||||||| | |||||||||||||||||||| | ||| | | |||||| Sbjct 16767 GGACTAGTGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAGCTTGAGGTAATG 16824 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 | ||| | ||| | | |||| | ||||| | ||| |||||| ||| Sbjct 16825 ACTAAGAAGGACTGACAGGGGCATTCGTATTAC---------GATGATATTCTTAGATCG 16875 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 |||| ||||||||||||| || ||||| ||||||| |||| ||| |||||| Sbjct 16876 CCGTCAGACGAACTACTGCGAAATAATTTGCCAAGAATGTTTTTATTAGTCA-AGAACGA 16934 Query 309 AAGTTAGGGG 318 |||| || || Sbjct 16935 AAGTCAGCGG 16944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914599061376