Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12455 203 1e-49 seq13988 167 1e-38 seq21947 120 1e-24 >seq12455 Length=71386 Score = 203 bits (224), Expect = 1e-49 Identities = 231/306 (75%), Gaps = 27/306 (9%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT---GT 461 || ||||||||| |||||||||||||||||||||||| | |||||| | |||| || Sbjct 35835 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATGGGGTTCTGT 35776 Query 462 C--AAACCCGTGCGCGTAATGAAAGTGAA--------------CGG---AGGTGGGAACC 502 ||||| ||| |||||||||||| ||| |||| ||| || Sbjct 35775 ACGAAACCTAAAGGCGCAATGAAAGTGAAGGTCAACCTCCGGTCGGCCTAGGTAGGATCC 35716 Query 503 C-GT-GAGGGT-GCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAAGAG 557 | || ||||| |||| | || || || || | ||| | ||| ||| ||||| Sbjct 35715 CCGTCGAGGGGCGCACTACCGGCCCGTCTCGACCACGTCGTTGGTGGGGCGGAGCAAGAG 35656 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 | || ||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 35655 CGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGACGAAGCCAGAGGAA 35596 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||||||||||| || |||| ||||| |||||||||||||||||||| |||||||||| Sbjct 35595 ACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAG 35536 Query 678 GGGCGA 683 |||||| Sbjct 35535 GGGCGA 35530 Score = 203 bits (224), Expect = 1e-49 Identities = 231/306 (75%), Gaps = 27/306 (9%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT---GT 461 || ||||||||| |||||||||||||||||||||||| | |||||| | |||| || Sbjct 62501 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATGGGGTTCTGT 62442 Query 462 C--AAACCCGTGCGCGTAATGAAAGTGAA--------------CGG---AGGTGGGAACC 502 ||||| ||| |||||||||||| ||| |||| ||| || Sbjct 62441 ACGAAACCTAAAGGCGCAATGAAAGTGAAGGTCAACCTCCGGTCGGCCTAGGTAGGATCC 62382 Query 503 C-GT-GAGGGT-GCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAAGAG 557 | || ||||| |||| | || || || || | ||| | ||| ||| ||||| Sbjct 62381 CCGTCGAGGGGCGCACTACCGGCCCGTCTCGACCACGTCGTTGGTGGGGCGGAGCAAGAG 62322 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 | || ||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 62321 CGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGACGAAGCCAGAGGAA 62262 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||||||||||| || |||| ||||| |||||||||||||||||||| |||||||||| Sbjct 62261 ACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAG 62202 Query 678 GGGCGA 683 |||||| Sbjct 62201 GGGCGA 62196 >seq13988 Length=29502 Score = 167 bits (184), Expect = 1e-38 Identities = 106/115 (92%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 18692 GGACCCGAAAGATGGTGAACTATGCCTGAGTAGGACGAAGCCAGAGGAAACTCTGGTGGA 18751 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 18752 GGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 18806 >seq21947 Length=99496 Score = 120 bits (132), Expect = 1e-24 Identities = 176/245 (72%), Gaps = 27/245 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT---GT 461 || ||||||||| |||||||||||||||||||||||| | |||||| | |||| || Sbjct 65193 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATGGGGTTCTGT 65134 Query 462 C--AAACCCGTGCGCGTAATGAAAGTGAA--------------CGG---AGGTGGGAACC 502 ||||| ||| |||||||||||| ||| |||| ||| || Sbjct 65133 ACGAAACCTAAAGGCGCAATGAAAGTGAAGGTCAACCCCCGGTCGGCCTAGGTAGGATCC 65074 Query 503 C-GT-GAGGGT-GCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAAGAG 557 | || ||||| |||| | || || || || | ||| | ||| ||| ||||| Sbjct 65073 CCGTCGAGGGGCGCACTACCGGCCCGTCTCGACCACATCGTTGGTGGGGCGGAGCAAGAG 65014 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 | || ||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 65013 CGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGACGAAGCCAGAGGAA 64954 Query 618 ACTCT 622 ||||| Sbjct 64953 ACTCT 64949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078591550100