Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq23663 269 4e-70 seq12455 269 4e-70 seq12362 269 4e-70 seq56793 194 3e-47 seq54649 120 5e-25 seq52171 111 3e-22 >seq23663 Length=6122 Score = 269 bits (298), Expect = 4e-70 Identities = 212/249 (85%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1659 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 1718 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--CAGCCACCAACCA 129 | |||| || | ||||| | |||| | |||||||||||||| || | || | | Sbjct 1719 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTGCACCGACGCAAAA 1776 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 1777 GGATCGGTGAA-CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 1835 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 1836 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 1895 Query 250 CAATCTGTC 258 ||||||||| Sbjct 1896 CAATCTGTC 1904 >seq12455 Length=71386 Score = 269 bits (298), Expect = 4e-70 Identities = 212/249 (85%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 64520 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 64579 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--CAGCCACCAACCA 129 | |||| || | ||||| | |||| | |||||||||||||| || | || | | Sbjct 64580 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTGCACCGACGCAAAA 64637 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 64638 GGATCGGTGAA-CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 64696 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 64697 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 64756 Query 250 CAATCTGTC 258 ||||||||| Sbjct 64757 CAATCTGTC 64765 >seq12362 Length=1066127 Score = 269 bits (298), Expect = 4e-70 Identities = 212/249 (85%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 325948 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 326007 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--CAGCCACCAACCA 129 | |||| || | ||||| | |||| | |||||||||||||| || | || | | Sbjct 326008 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTGCACCGACGCAAAA 326065 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| || |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 326066 GGATCGGTGAA-CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 326124 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 326125 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 326184 Query 250 CAATCTGTC 258 ||||||||| Sbjct 326185 CAATCTGTC 326193 >seq56793 Length=194830 Score = 194 bits (214), Expect = 3e-47 Identities = 187/247 (76%), Gaps = 36/247 (15%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||| ||| ||||||| ||||||| |||||||||||| ||||||||||| Sbjct 40530 TCCTTCAGTGTAGCGTGCGAGCGGCCCCGAACATCAAAGGGCATCACATACCTGTTATTG 40471 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 | |||| || | ||| || | |||| | |||||||||||||| Sbjct 40470 C-TCAATCTCCTGTTG-CTAAACGCCACTTGTCCCTCTAAGAAGT--------------- 40428 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 ||| || ||||||||||||||||||||||||||||||||| Sbjct 40427 -------------------AGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 40387 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| Sbjct 40386 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCAACGAATCAAGAAAGAACCATCA 40327 Query 252 ATCTGTC 258 ||||||| Sbjct 40326 ATCTGTC 40320 >seq54649 Length=685658 Score = 120 bits (132), Expect = 5e-25 Identities = 86/99 (87%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||| |||||| |||||||| ||||| |||||||||||| | |||||||||||| Sbjct 476387 GTCTTGTTTGTTATCAGAATTAACTAGACATATCACTCCACCATCAGAGAACGGCCATGT 476328 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||||| |||||||||||||| | ||||||||| Sbjct 476327 ACCACCACCCACCGAATCAAGAAAGAGTTCTCAATCTGT 476289 >seq52171 Length=211835 Score = 111 bits (122), Expect = 3e-22 Identities = 85/98 (87%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 96 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 37 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCT 109 ||||| | || ||||| | |||| | |||||||| Sbjct 36 -CTCAATC-TCGTGTGGCTAAACGCCACTTGTCCCTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796293155022