Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq19078 392 6e-107 seq12455 392 6e-107 seq13988 199 7e-49 seq6089 154 3e-35 seq26543 152 9e-35 seq42999 93.3 7e-17 >seq19078 Length=2550 Score = 392 bits (434), Expect = 6e-107 Identities = 264/294 (90%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 1901 TACTGAGCAGGATTACCATTGCAACGACATGTCATCAGTAGGGTAAAACTAACCTGTCTC 1842 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1841 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 1782 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1781 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 1722 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1721 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 1662 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 1661 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 1608 >seq12455 Length=71386 Score = 392 bits (434), Expect = 6e-107 Identities = 264/294 (90%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 55507 TACTGAGCAGGATTACCATTGCAACGACATGTCATCAGTAGGGTAAAACTAACCTGTCTC 55566 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 55567 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 55626 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55627 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 55686 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 55687 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 55746 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 55747 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 55800 Score = 392 bits (434), Expect = 6e-107 Identities = 264/294 (90%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 67101 TACTGAGCAGGATTACCATTGCAACGACATGTCATCAGTAGGGTAAAACTAACCTGTCTC 67160 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 67161 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 67220 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67221 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 67280 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 67281 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 67340 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 67341 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 67394 >seq13988 Length=29502 Score = 199 bits (220), Expect = 7e-49 Identities = 133/148 (90%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21736 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 21677 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265 |||||||||||||||||||||| ||||||| || | ||| | | | | ||||||||| Sbjct 21676 TATCCCTGTGGTAACTTTTCTGACACCTCTTGCTTAAAACTCTTAAAGTCAAAAGGATCG 21617 Query 266 ATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||| |||||| ||| ||||||| Sbjct 21616 ATAGGCCACGCTTTCACGGTCTGTATTC 21589 >seq6089 Length=1136118 Score = 154 bits (170), Expect = 3e-35 Identities = 112/127 (88%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 6 AGCGGAATTACCATTGGGGCGACG-GTCATCA-GTAGGGTAAAACTAACCTGTCTCATGA 63 ||| | |||||||||| |||| ||||||| |||||||||||||||||||||||| || Sbjct 704809 AGCAGGATTACCATTGCAACGACATGTCATCAAGTAGGGTAAAACTAACCTGTCTCAAGA 704868 Query 64 CGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 704869 CGGTATTAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATT 704928 Query 124 CTGCTTC 130 |||||| Sbjct 704929 ATGCTTC 704935 >seq26543 Length=330724 Score = 152 bits (168), Expect = 9e-35 Identities = 104/116 (90%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| | | | |||||||||| ||| |||||||||||||||||||||| ||||||| Sbjct 216205 TACTGATCAGGATTACCATTGCAATGACATGTCATCAGTAGGGTAAAACTAATCTGTCTC 216264 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 216265 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 216320 >seq42999 Length=783421 Score = 93.3 bits (102), Expect = 7e-17 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 || || || || | | | ||| |||||||||||||||| ||| |||||||||| | || | Sbjct 185518 GGAATAATCGGTAAAACAGACCTCGAAGGATCAAAAAGAAACATCGCTATGAATGATTAG 185577 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG- 249 || ||| |||||| || | |||||||| | ||||| ||| || || ||| |||| Sbjct 185578 ATGTCACCGGCCAGTCATGCATGTGGTAAATGTTCTGATACCCCT-TACTTAAACTTCGT 185636 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | | | ||||||| || | |||| |||||| || |||||| Sbjct 185637 AAAGTCAAAAGGATTCATTGACCACGCTTTCACTGTCTGTATT 185679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853838983872