Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq52171 82.4 5e-14 seq23663 82.4 5e-14 seq12455 82.4 5e-14 seq12362 82.4 5e-14 seq56793 77.0 2e-12 seq13697 77.0 2e-12 >seq52171 Length=211835 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | | || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 291 CTCACTAAAACGTC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 234 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 233 TAAT-CAACGCGAGCT 219 >seq23663 Length=6122 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | | || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1464 CTCACTAAAACGTC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1521 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 1522 TAAT-CAACGCGAGCT 1536 >seq12455 Length=71386 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | | || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 64325 CTCACTAAAACGTC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 64382 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 64383 TAAT-CAACGCGAGCT 64397 >seq12362 Length=1066127 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | | || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 325753 CTCACTAAAACGTC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 325810 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 325811 TAAT-CAACGCGAGCT 325825 >seq56793 Length=194830 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | | || ||||||||| | ||||||||| |||||||||||||||||||| Sbjct 40725 CTCACTAAAACGTC-CAATCGGTAGTA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACG 40668 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 40667 TAAT-CAACGCGAGCT 40653 >seq13697 Length=840060 Score = 77.0 bits (84), Expect = 2e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 64 CATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGC 123 || ||||||||| ||||||||||| |||||||||| |||||||||||||| ||||| ||| Sbjct 230149 CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGTGCAGGGACGTAATA-AACGCGAGC 230206 Query 124 T 124 | Sbjct 230207 T 230207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300614833160