Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq23663 215 1e-53 seq12455 215 1e-53 seq12362 215 1e-53 seq52171 210 4e-52 seq56793 183 6e-44 >seq23663 Length=6122 Score = 215 bits (238), Expect = 1e-53 Identities = 205/258 (79%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1760 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 1703 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || ||||| || | Sbjct 1702 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGTCTTTGC 1643 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||| | |||| | ||||||| | | || ||| ||||||| ||||| | | ||| Sbjct 1642 CCTTGCCTGGAAAGGTTGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 1583 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 1582 TAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 1523 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1522 ACGTCCCTGCCCTTTGTA 1505 >seq12455 Length=71386 Score = 215 bits (238), Expect = 1e-53 Identities = 205/258 (79%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 64621 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 64564 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || ||||| || | Sbjct 64563 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGTCTTTGC 64504 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||| | |||| | ||||||| | | || ||| ||||||| ||||| | | ||| Sbjct 64503 CCTTGCCTGGAAAGGTTGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 64444 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 64443 TAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 64384 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 64383 ACGTCCCTGCCCTTTGTA 64366 >seq12362 Length=1066127 Score = 215 bits (238), Expect = 1e-53 Identities = 205/258 (79%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 326049 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 325992 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || ||||| || | Sbjct 325991 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGTCTTTGC 325932 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||| | |||| | ||||||| | | || ||| ||||||| ||||| | | ||| Sbjct 325931 CCTTGCCTGGAAAGGTTGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 325872 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 325871 TAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 325812 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 325811 ACGTCCCTGCCCTTTGTA 325794 >seq52171 Length=211835 Score = 210 bits (232), Expect = 4e-52 Identities = 181/223 (81%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 29 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTAC 87 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||| || ||||| || | ||||| | |||| | ||||||| | | || || Sbjct 88 ACTGAAGGAATCAACGTGTCTTTGCCCTTGCCTGGAAAGGTTGGGTAACCCGTTGAACCT 147 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||||| ||||| | | ||| |||| || | | | |||||||||| || |||||| Sbjct 148 CCTTCGTGCTAGGGATTGGGGCTTGTAATTCTTCCCCATGAACGAGGAATTCCCAGTAAG 207 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||| ||| |||||||||||||||||||||||||||| Sbjct 208 CGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 250 >seq56793 Length=194830 Score = 183 bits (202), Expect = 6e-44 Identities = 200/259 (77%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||| ||| | ||||| ||||||||||| |||| Sbjct 40429 CTTCTTAGAGGGACAAGTGGCGTTTAGCAACAGGA-GATTGAG-CAATAACAGGTATGTG 40486 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||| ||||||| ||||||| ||| ||||||||||| || ||||| || | Sbjct 40487 ATGCCCTTTGATGTTCGGGGCCGCTCGCACGCTACACTGAAGGAATCAACGTGTCTTTGC 40546 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTT-AAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||| | |||| | ||||||| | ||| || || ||||||| ||||| | | || Sbjct 40547 CCTTGCCTGGAAAGGATGGGTAA-CACGTTGAACCTACTTCGTGCTAGGGATTGGGGCTT 40605 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||| || | | | |||| ||||| | |||||||||| ||||| ||| ||||||||| Sbjct 40606 GTAATTCTTCCCCATGAACGTGGAATTTCCAGTAAGCGCGAGTCATAAGCTCGCGTTGAT 40665 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 40666 TACGTCCCTGCCCTTTGTA 40684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946578049536