Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq19078 107 3e-21 seq12455 107 3e-21 >seq19078 Length=2550 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 1899 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 1956 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1957 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 2009 >seq12455 Length=71386 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 55509 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 55452 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 55451 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 55399 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 67103 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 67046 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 67045 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 66993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818678906368