Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq111391 93.3 2e-17 seq95707 93.3 2e-17 seq95691 93.3 2e-17 >seq111391 Length=3646 Score = 93.3 bits (102), Expect = 2e-17 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG-TCAAAATGATAACATCGCC 59 |||||||||||||||| |||| || ||| ||||| ||||| || || |||| | | Sbjct 2336 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCG-GCGAGGTCGTCATCGTAACGCCCGC 2278 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | ||| ||||| ||||| || | |||| |||||||||||||||||||||| Sbjct 2277 CGATCGCCAGTTGGCATCGTTTATAGTCAGAACTAGGACGGTATCTGATCGTCTTCGA 2220 >seq95707 Length=3822 Score = 93.3 bits (102), Expect = 2e-17 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG-TCAAAATGATAACATCGCC 59 |||||||||||||||| |||| || | | ||||| ||||| || ||| |||| | | Sbjct 427 GAACCCAAAGACTTTGGTTTCCCGGAGGCTGCCG-GCGAGGTCGTCATGGTAACGCCCGC 369 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | ||| ||||| ||||| || | |||| |||||||||||||||||||||| Sbjct 368 CGATCGCCAGTTGGCATCGTTTATAGTCAGAACTAGGACGGTATCTGATCGTCTTCGA 311 >seq95691 Length=3218 Score = 93.3 bits (102), Expect = 2e-17 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCAAAATGATAACATCGCC 59 |||||||||||||||| |||| || | | ||||| |||| ||| ||| |||| | | Sbjct 957 GAACCCAAAGACTTTGGTTTCCCGGAGGCTGCCG-GCGAGGTCGTCATGGTAACGCCCGC 1015 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | ||| ||||| ||||| || | |||| |||||||||||||||||||||| Sbjct 1016 CGATCGCCAGTTGGCATCGTTTATAGTCAGAACTAGGACGGTATCTGATCGTCTTCGA 1073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278086437210