Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq100657 120 1e-24 seq88381 109 2e-21 seq72595 109 2e-21 seq79957 105 3e-20 seq16744 105 3e-20 >seq100657 Length=4023 Score = 120 bits (132), Expect = 1e-24 Identities = 90/106 (85%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||||||||||||||||| ||| |||||||||||||||||||||||||| || || Sbjct 3507 AGATGGTGAACTATGCCTGGGAAGGTCGAAGCCAGAGGAAACTCTGGTGGAGGACCGTAG 3566 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||| ||||||||| ||||||| | ||||||||||||||| Sbjct 3567 CGATTCTAACGTGCAAATTGATCGTCCTACCTGGGTATAGGGGCGA 3612 >seq88381 Length=1835 Score = 109 bits (120), Expect = 2e-21 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| | ||| |||||||||||||| ||||| ||||| || Sbjct 1140 AAAGATGGTGAACTATGCCTGGAAAGGTCGAAGCCAGAGGAAAATCTGGCGGAGGACCGT 1199 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | |||| ||||||||| ||||||| || |||||||| |||||| Sbjct 1200 CGAGATTCTAACGTGCAAATTGATCGTCCTATCTGGGTATATGGGCGA 1247 >seq72595 Length=3313 Score = 109 bits (120), Expect = 2e-21 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| | ||| |||||||||||||| ||||| ||||| || Sbjct 2448 AAAGATGGTGAACTATGCCTGGAAAGGTCGAAGCCAGAGGAAAATCTGGCGGAGGACCGT 2389 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | || | ||||||||| ||||||| || ||||||||||||||| Sbjct 2388 CGAGATTATAACGTGCAAATTGATCGTCCGATCTGGGTATAGGGGCGA 2341 >seq79957 Length=4144 Score = 105 bits (116), Expect = 3e-20 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||||||||||||||||| | ||| |||||||||||||| ||||| ||||| || | Sbjct 2891 AGATGGTGAACTATGCCTGGAAAGGTCGAAGCCAGAGGAAAATCTGGCGGAGGACCGGCG 2832 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||| ||||||||| ||||||| || ||||||||||| ||| Sbjct 2831 AGATTCTAACGTGCAAATTGATCGTCCGATCTGGGTATAGGGACGA 2786 >seq16744 Length=1543 Score = 105 bits (116), Expect = 3e-20 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||||||||||||||||| | ||| |||||||||||||| ||||| ||||| || | Sbjct 762 AGATGGTGAACTATGCCTGGAAAGGTCGAAGCCAGAGGAAAATCTGGCGGAGGACCGGCG 821 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||| ||||||||| ||||||| || ||||||||||| ||| Sbjct 822 AGATTCTAACGTGCAAATTGATCGTCCGATCTGGGTATAGGGACGA 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077423018450