Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq95707 271 1e-70 seq111391 257 3e-66 seq95691 255 9e-66 seq6452 217 2e-54 seq107237 111 3e-22 >seq95707 Length=3822 Score = 271 bits (300), Expect = 1e-70 Identities = 220/261 (84%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTC-AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 812 ACTCGCTGA-TCCGTCCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAG 754 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||| || | || | ||||| | |||| |||||||||||||||| | Sbjct 753 ACCTGTTATTGC-TCGATCT-CGTGTGGCTAAACGCCACTAGTCCCTCTAAGAAGTTGGA 696 Query 121 CACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | || ||| | | | | | |||||||||| | | ||||||||||||||||||| Sbjct 695 CGCCGACCGCCGAGGNTCGCGTAACTATTTAGCATGCCAGAGTCTCGTTCGTTATCGGAA 636 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 635 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCA 576 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 575 AGAAAGAGCTGTCAATCTGTC 555 >seq111391 Length=3646 Score = 257 bits (284), Expect = 3e-66 Identities = 211/248 (85%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 2708 CAATGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC-TCG 2650 Query 77 AACTTCCATTGGCTGGAA--GCCAATAGTCCCTCTAAGAAGC--CA-GCC-ACCAACCAT 130 | || | | |||| || |||| |||||||||||||||| || ||| ||| | | Sbjct 2649 ATCTCGCGT-GGCTAAAAACGCCACTAGTCCCTCTAAGAAGTTTCACGCCGACCGCCGAG 2591 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 |||| | |||||||||| | | |||||||||||||||||||||||||||||||| Sbjct 2590 GGTCGC-GTAACTATTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 2532 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 2531 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTGTC 2472 Query 251 AATCTGTC 258 |||||||| Sbjct 2471 AATCTGTC 2464 >seq95691 Length=3218 Score = 255 bits (282), Expect = 9e-66 Identities = 216/261 (83%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTC-AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 572 ACTCGCTGA-TCCGTCCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAG 630 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||| || | || | ||||| | |||| |||||||||||||||| | Sbjct 631 ACCTGTTATTGC-TCGATCT-CGTGTGGCTAAACGCCACTAGTCCCTCTAAGAAGTTGGA 688 Query 121 CACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | || ||| | | | | | |||||||||| | | ||||||||||||||||||| Sbjct 689 CGCCGACCGCCGAGGGTCGCGTAACTATTTAGCATGCCAGAGTCTCGTTCGTTATCGGAA 748 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||| Sbjct 749 TTAACCAGACAAATCGCTCCACCAACTANNNANGGCCATGCACCACCACCCACAGAATCA 808 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 809 AGAAAGAGCTGTCAATCTGTC 829 >seq6452 Length=7885 Score = 217 bits (240), Expect = 2e-54 Identities = 190/232 (82%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTC-AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| || |||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1525 ACTCGCTGA-TCCGTCCAGTGTAGCGCGCGTGCGGCCTCGAACATCTAAGGGCATCACAG 1467 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||| ||| | || | ||||| | |||| |||||||||||||||| | Sbjct 1466 ACCTGTTATATGCTCGATCT-CTTGTGGCTAAACGCCACTAGTCCCTCTAAGAAGTTTGA 1408 Query 121 CACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | || ||| | | | | | |||||||||| | | ||||||||||||||||||| Sbjct 1407 CGCCGACCGCCGAGGGTCGCGTAACTATTTAGCATGCCAGAGTCTCGTTCGTTATCGGAA 1348 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1347 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA 1296 >seq107237 Length=10426 Score = 111 bits (122), Expect = 3e-22 Identities = 98/116 (84%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTC-AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| || |||||| ||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 2217 ACTCGCTGA-TCCGTCCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGAGCATCACAG 2159 Query 61 ACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||||||||| || | || ||| ||||| | |||| | |||||||||||||| Sbjct 2158 ACCTGTTATTG-CTAGATCT--CATGTGGCTAAACGCCACTGGTCCCTCTAAGAAG 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795872647059