Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq95707 95.1 1e-17 seq95691 95.1 1e-17 seq111391 91.5 2e-16 seq117896 78.8 1e-12 seq104009 73.4 4e-11 >seq95707 Length=3822 Score = 95.1 bits (104), Expect = 1e-17 Identities = 131/179 (73%), Gaps = 11/179 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACAT----TACCA 68 ||||||||||||||||||||| |||||||||||||| || || | ||| | || Sbjct 64 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---GCCCGCCTGCATAGTGTCGCA 120 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAG--GTTTCTAGGACCGCCCGTAA 126 |||||||| ||||||||| | |||| ||| || | ||| ||| || |||| Sbjct 121 TGGAATAACGGAATAGGACCT-CGGTCTCGTTTCGTTGGCGTTCGCGGGAGCG-AGGTAA 178 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | |||||| ||| ||| || |||| |||||||||||||||| Sbjct 179 TGATTAAGAGGGACGGCCGGGGGCGTCCGTACTCTGCCGTCAGAGGTGAAATTCTTGGA 237 >seq95691 Length=3218 Score = 95.1 bits (104), Expect = 1e-17 Identities = 131/179 (73%), Gaps = 11/179 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACAT----TACCA 68 ||||||||||||||||||||| |||||||||||||| || || | ||| | || Sbjct 1320 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---GCCCGCCTGCATAGTGTCGCA 1264 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAG--GTTTCTAGGACCGCCCGTAA 126 |||||||| ||||||||| | |||| ||| || | ||| ||| || |||| Sbjct 1263 TGGAATAACGGAATAGGACCT-CGGTCTCGTTTCGTTGGCGTTCGCGGGAGCG-AGGTAA 1206 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | |||||| ||| ||| || |||| |||||||||||||||| Sbjct 1205 TGATTAAGAGGGACGGCCGGGGGCGTCCGTACTCTGCCGTCAGAGGTGAAATTCTTGGA 1147 >seq111391 Length=3646 Score = 91.5 bits (100), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT-GCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||| ||| || | ||| | ||||| Sbjct 1973 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGTTTTTCGCCTGCATAGTGTTGCATGG 2032 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAATGAT 130 |||||| ||||| ||| | |||| ||| || || | || || |||||||| Sbjct 2033 AATAATGGAATAAGACCT-CGGTCTCGTTTCGTTGGCGTTCGCGAGTGCGAGGTAATGAT 2091 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | ||| || |||||| ||| ||| || || | ||||||||||||||||| Sbjct 2092 TGAGAGGGACAGCCGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGAT 2147 >seq117896 Length=20173 Score = 78.8 bits (86), Expect = 1e-12 Identities = 80/102 (78%), Gaps = 8/102 (8%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACAT----TACCA 68 |||||||||||||||| ||| ||| ||| |||| ||||||| ||||| | || Sbjct 467 TTTACTTTGAAAAAATCGGAGTGTTTAAATCAGG---TTGCTCGCCTACATGTTGTTGCA 411 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| ||||||||| | ||||| |||||||| ||||| Sbjct 410 TGGAATAACGGAATAGGACCT-CGGTTGTATTTTGTTGGTTT 370 >seq104009 Length=6482 Score = 73.4 bits (80), Expect = 4e-11 Identities = 89/118 (75%), Gaps = 9/118 (8%) Strand=Plus/Minus Query 23 AAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACAT----TACCATGGAATAATA 78 ||||||||||| ||||||| | |||| | |||| |||| | ||||||||||| Sbjct 1986 AAAAATTAGAGTGTTCAAATCTGGCC---GGTCGACAACATAGTGTTGCATGGAATAATG 1930 Query 79 GAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATAC 136 ||||||||| | | ||| |||||||| ||||| | | || ||||||||| ||||| Sbjct 1929 GAATAGGACCT-CAGTTGTATTTTGTTGGTTTACGGAAGCG-ACGTAATGATTAATAC 1874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511404110560