Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq81857 104 4e-20 seq32758 87.8 3e-15 seq108633 86.0 1e-14 seq10702 86.0 1e-14 seq13868 80.6 4e-13 seq75876 73.4 6e-11 >seq81857 Length=3324 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| | |||||| |||| | ||||| || | | Sbjct 182 GTACGAGAGGAACCGCAGA-TTCAGAC-ATTTGGTTCATGCGCTCGGCTGACAAGCCGAT 125 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 124 GGCGCGAAGCTACCATCTGGGGGATTACGACTGAACGCCTCTAAGTCGGAATCC 71 >seq32758 Length=13265 Score = 87.8 bits (96), Expect = 3e-15 Identities = 93/119 (78%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| |||| |||||| | |||||| |||| || |||| | || | Sbjct 6759 GTACGAGAGGAACCACGGA-TTCAGAC-ATTTGGTTCATGCGCTTGGCTGATAGGCCAAT 6816 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||||||||| | |||||| |||| || |||||||| |||||| |||| Sbjct 6817 GGTGCGAAGCTACCATCTGGGGAATTATGAATGAAGGCTTCTAAGTCTGAATCC-TGCC 6874 >seq108633 Length=9497 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || ||| || | |||||| |||| | |||| || | | Sbjct 170 GTACGAGAGGAACCGCAGA-TTCGGAC-ATTTGGTTCATGCGCTCGGCTGAAAAGCCGAT 113 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||||| |||||| | ||||||||||| ||||| || ||| Sbjct 112 GGCGCGAAGCTACCATCTGGAGGATTACGACTGAACGCCTCCAAGTCGGAGTCC 59 >seq10702 Length=13502 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| |||| |||||| | |||||| |||| || |||| | || | Sbjct 6725 GTACGAGAGGAACCACGGA-TTCAGAC-ATTTGGTTCATGCGCTTGGCTGATAGGCCAAT 6668 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| | ||||| |||| || ||||||||||||||| Sbjct 6667 GGTGCGAAGCTACCATCTGGGGACTTATGAATGAAGGCTTCTAAGTCAGAATCC 6614 >seq13868 Length=25300 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||||||||| | || |||||| | |||||| ||| || |||| || || || Sbjct 19393 TACGAGAGGAACCACAGA-TTCAGAC-ATTTGGTTCATGCCCTTGGCTGATAAGCCAATG 19336 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| | || ||| |||| |||| ||||||||||||| Sbjct 19335 GTGCGAAGCTACCATCTGGGGCATCATGAATGAATGCCTTTAAGTCAGAATCC 19283 >seq75876 Length=5158 Score = 73.4 bits (80), Expect = 6e-11 Identities = 79/102 (77%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| | |||||| |||| | ||||| || | | Sbjct 100 GTACGAGAGGAACCGCAGA-TTCAGAC-ATTTGGTTCATGCGCTCGGCTGACAAGCCGAT 43 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102 | ||| ||||||||||| |||||| | |||||||||||| Sbjct 42 GGCGCTCGGCTACCATCTGGGGGATTACGACTGAACGCCTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818246576896